View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5442_high_19 (Length: 324)
Name: NF5442_high_19
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 9494570 - 9494884
Alignment:
| Q |
1 |
ataattcataatctggagttgcaggtacttttcaactatcatgtaccattgtgcttggttaattctataatgcactatgaaattgatgtactgtgtaact |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9494570 |
ataattcagaatctggagttgcaggtacttttcaactatcatgtaccattgtacttggttaattctataatgcactatgaaattgatgtactgtgtaact |
9494669 |
T |
|
| Q |
101 |
gcactatggagatattgtttctaaaatttaaatttactatgtttacaaatcaaataaaaagcgaatagatataagtataatgagaaatgttgtatattac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9494670 |
gcactatggagatattgtttctaaaatttaaatttactatgtttacaaatcaaataaaaagcgaatagatataagtataatgagaaatgttgtatattac |
9494769 |
T |
|
| Q |
201 |
gaatgcgaaacacgtggccgaacatggtgatttccatccagtcaaagtttatatttttccatctttaaatgttatttatgttatttaaaaaccaattgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9494770 |
gaatgcgaaacacgtggccgaacatggtgatttccatccagtcaaagtttatatttttccatctttaaatgttatttatgttatttaaaaaccaattgca |
9494869 |
T |
|
| Q |
301 |
cgtagccacctttgc |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9494870 |
tgtagccacctttgc |
9494884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 20196330 - 20196402
Alignment:
| Q |
20 |
tgcaggtactttt-caactatcatgtaccattgtgcttggttaattctataatgcactatgaaattgatgtact |
92 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
20196330 |
tgcaggtactttttcaactatcatataccattgtactta-ttaattctataatgcactatgaaattgttgtact |
20196402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 9522878 - 9522952
Alignment:
| Q |
20 |
tgcaggtactttt-caactatcatgtaccattgtgcttggttaattctataatgcactatgaaattgatgtactgt |
94 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||| | |||||| |
|
|
| T |
9522878 |
tgcaggtactttttcaactatcatgtaccattgtactt-attaattctataatgcactatgacattgttctactgt |
9522952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 22514152 - 22514080
Alignment:
| Q |
180 |
atgagaaatgttgtatattacgaatgcgaaacacgtggccgaacatggtgatttccatcc-agtcaaagttta |
251 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || || ||| || | |||||||||| |||||||||||| |
|
|
| T |
22514152 |
atgagaaatgttgtatattacgaatgtgaaacatatgaccaaacttgttcatttccatccaagtcaaagttta |
22514080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 17367318 - 17367267
Alignment:
| Q |
220 |
gaacatggtgatttccatccag-tcaaagtttatatttttccatctttaaat |
270 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
17367318 |
gaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaat |
17367267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University