View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_20 (Length: 311)
Name: NF5442_high_20
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 39081018 - 39081299
Alignment:
| Q |
12 |
atgagttgacctt-ggaagaaagatgcctcatatatagggaattaactatagggtccctaaattgacaaataacatttgataaacatattttttaaatca |
110 |
Q |
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| T |
39081018 |
atgagttgacctttggaagaaagatgcctcatatatagggaattaactatagggtccctaaattcacaaataacatttgataaacatattttttaaataa |
39081117 |
T |
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| Q |
111 |
taaattcaggatcctctcaccacagttagttgtctatataagctaattatatcactcttatagaacaagtcactactctttaagtttcctacttaagaaa |
210 |
Q |
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| T |
39081118 |
taaattcaggatcctctcaccacagttagttgtctatataagctaattatatcactcttatagaacaagtcactactctttaagtttcctacttaagaaa |
39081217 |
T |
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| Q |
211 |
aaatttcttccaaaaaatatggcatttgctaccatactagtgttccatttcttgcttcttgctccagttttgatttattctt |
292 |
Q |
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| T |
39081218 |
aaatttcttccaaaaaatatggcatttgctaccatactagtgttccatttcttgcttcttgctccagttttgatttattctt |
39081299 |
T |
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