View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_30 (Length: 250)
Name: NF5442_high_30
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9494575 - 9494341
Alignment:
| Q |
1 |
aattatctccacttgcagcattcttctttctccttgacctacacatacagttgaaagcatcatatagcaaaattaccacatcattttactatatctatga |
100 |
Q |
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| T |
9494575 |
aattatctccacttgcagcattcttctttctccttgacctacacatacagttgaaagcatcatatagcaaaattaccacatcattttactatatctatga |
9494476 |
T |
|
| Q |
101 |
tcaatcaaatttagataaacaaattgtgtaaaattcaattacactatgacccaattacaacgaggaagtaataataagaacagatgaataaaaatcaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9494475 |
tcaatcaaatttagataaacaaattgtgtaaaattcaattacactatgacccaattacaatgaggaagtaataataagaacagatgaataaaaatcaaac |
9494376 |
T |
|
| Q |
201 |
ctttggcttggatcatcatcgttatgatgaaaatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9494375 |
ctttggcttggatcatcatcgttatgatgaaaatt |
9494341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22514248 - 22514292
Alignment:
| Q |
1 |
aattatctccacttgcagcattcttctttctccttgacctacaca |
45 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22514248 |
aattatctccacttgcagcattcttctttttccttgacctacaca |
22514292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23046301 - 23046345
Alignment:
| Q |
1 |
aattatctccacttgcagcattcttctttctccttgacctacaca |
45 |
Q |
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|||||| |||||||||||||||||| ||| ||||||||||||||| |
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| T |
23046301 |
aattatttccacttgcagcattcttgtttttccttgacctacaca |
23046345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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