View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5442_high_31 (Length: 250)
Name: NF5442_high_31
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8964164 - 8964406
Alignment:
| Q |
1 |
attggttttctgtcatcattgttatactataccttcactatgtgatgagtaatgaagaaactaactaagttaatgtgcatattgttttagtatcaatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8964164 |
attggttttctgtcatcattgttatactataccttcactatgtgatgagtaatgaagaaactaactaagttaatgtgcatattgttttagtatcaatatt |
8964263 |
T |
|
| Q |
101 |
taatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaatgaaattgatgaaactgtagatgaaagaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8964264 |
taatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaatgaaattgatgaaactgtagatgaaagaaaac |
8964363 |
T |
|
| Q |
201 |
cttattttctttgcaaacacattccattcaagctcttcatctc |
243 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8964364 |
catattttctttgcaaatacattccattcaagctcttcatctc |
8964406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 8944943 - 8944850
Alignment:
| Q |
109 |
atatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaatgaaattgatgaaactgtagatgaaagaaaacct |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||||||||||| | | || ||||||||||| |||| |||||||||||||||| |
|
|
| T |
8944943 |
atatcgtttaccactaatgaaaaaagttgaatcacagattaaaaatagagacggaaaaattgaaattgatggaactagagatgaaagaaaacct |
8944850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 21685667 - 21685541
Alignment:
| Q |
70 |
ttaatgtgcatattgttttagtatcaatatttaat-gggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaa |
168 |
Q |
| |
|
||||||| |||||||||| ||| | ||| ||| || |||||||||||||||||| |||| ||||||||||||| | ||||| || | ||| || | || |
|
|
| T |
21685667 |
ttaatgttcatattgtttcagtttaaatgtttgatagggcatatcgtttaccaccaattaaaaaagttgaattatatattaagaaaatagacagaaaaag |
21685568 |
T |
|
| Q |
169 |
tgaaattgatgaaactgtagatgaaag |
195 |
Q |
| |
|
||||||||||| |||| ||||||||| |
|
|
| T |
21685567 |
tgaaattgatggaactagagatgaaag |
21685541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University