View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_32 (Length: 249)
Name: NF5442_high_32
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_32 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 53510078 - 53510309
Alignment:
| Q |
18 |
ccatctggcttcatgctctgaaacagcagagcatcccccatttttggtttcactgatggacccttttcaggatatttggatacagaatttatgttaggct |
117 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53510078 |
ccatctggcttcatgctccgaaacagcagagcatcacccatttttggtttcactgatagacccttttcaggatatttggatacagaatttatgttaggct |
53510177 |
T |
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| Q |
118 |
tagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53510178 |
tagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgtaaa |
53510277 |
T |
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| Q |
218 |
gcacaacgcaaaaccaatatatcgaaagagaa |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
53510278 |
gcacaacgcaaaaccaatatatcgaaagagaa |
53510309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 53513687 - 53513918
Alignment:
| Q |
18 |
ccatctggcttcatgctctgaaacagcagagcatcccccatttttggtttcactgatggacccttttcaggatatttggatacagaatttatgttaggct |
117 |
Q |
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|||||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||| | | ||| | |||||||||||||| | | ||| |||| |
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| T |
53513687 |
ccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatttggatacagaagtaaagttgggct |
53513786 |
T |
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| Q |
118 |
tagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgtaaa |
217 |
Q |
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| T |
53513787 |
gagcatcaggaaatacagtctcaccaccttcttcaacgtcagacctacataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcataaa |
53513886 |
T |
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| Q |
218 |
gcacaacgcaaaaccaatatatcgaaagagaa |
249 |
Q |
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| T |
53513887 |
gcacaatgcaaaaccaatatatggaaagagaa |
53513918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 53523984 - 53524218
Alignment:
| Q |
18 |
ccatctggcttcatgctctgaaacagcagagcatcccccatttttggtttcactgatggacccttttcaggat---atttggatacagaatttatgttag |
114 |
Q |
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||||||||||| | |||| ||||||||||||||| |||||||| ||||||||| | ||||||| |||||| |||||||||||||||| | ||| | |
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| T |
53523984 |
ccatctggcttaacgctccaaaacagcagagcatcgcccattttcggtttcactactaaaccctttccaggatgatatttggatacagaattaaagttgg |
53524083 |
T |
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| Q |
115 |
gcttagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
53524084 |
gcttagcattaggaaatacagtctcaccaccttcttcaacgtcagaccttcataagtaccaaaaacaaagaactgtcaaatttgtatacaattccatcat |
53524183 |
T |
|
| Q |
215 |
aaagcacaacgcaaaaccaatatatcgaaagagaa |
249 |
Q |
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| T |
53524184 |
aaagcataatataaaaccaatatatggaaagagaa |
53524218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 53547714 - 53547847
Alignment:
| Q |
116 |
cttagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgta |
215 |
Q |
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||||||| ||||||||| |||||||| |||||||||||||| ||||| | |||||| ||||| | ||| ||||||| || ||||||||||||||| | |
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| T |
53547714 |
cttagcagcaggaaatacggtctcacctccttcttcaacgtcagacctacgtaaggagaaaaaagagggagctgtcaagttggtatacaattccatcaca |
53547813 |
T |
|
| Q |
216 |
aagcacaacgcaaaaccaatatatcgaaagagaa |
249 |
Q |
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| T |
53547814 |
aagcacactgccaaaccaatttatggaaagagaa |
53547847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 53547599 - 53547663
Alignment:
| Q |
19 |
catctggcttcatgctctgaaacagcagagcatcccccatttttggtttcactgatggacccttt |
83 |
Q |
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|||||||| |||||||| ||||||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
53547599 |
catctggcctcatgctccaaaacagcagagcatcacccatttttggtttcagtgatagacccttt |
53547663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 20196688 - 20196740
Alignment:
| Q |
114 |
ggcttagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttca |
166 |
Q |
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| T |
20196688 |
ggcttagcagaaggaaatacggtctcaccgccttcttcaacatcagaccttca |
20196740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 16608909 - 16608804
Alignment:
| Q |
134 |
agtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgtaaagcacaacgcaaaacca |
233 |
Q |
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|||||| ||||||||||||||||| ||||||||| ||||||||||| ||| |||| |||||||||| || |||||| |||||| || ||||||||| |
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| T |
16608909 |
agtctcgccaccttcttcaacgtcagaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactccatcacaaagcataatgcaaaacca |
16608810 |
T |
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| Q |
234 |
atatat |
239 |
Q |
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||||| |
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| T |
16608809 |
ttatat |
16608804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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