View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_high_35 (Length: 240)
Name: NF5442_high_35
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_high_35 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 6392362 - 6392578
Alignment:
| Q |
9 |
ggagcagcacagaccttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttg |
108 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6392362 |
ggagcaacacacaccttttgtgggggatggatggcctttgttcgtgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttg |
6392461 |
T |
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| Q |
109 |
tgatgaaggtttatatatctggggttggaaaagaaggtcttgactatcaaaattataaacgaactcaaaaatgtgcttgtttgtgagatagataaatcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6392462 |
tgatgaaggtttatatatctggggttggaaaagaaggtcttgactatcaaaattataaacgagctcaaaaatgtgcttgtttgtgagatagataaatcaa |
6392561 |
T |
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| Q |
209 |
tcttagatgaagatttt |
225 |
Q |
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||||||||||||||||| |
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| T |
6392562 |
tcttagatgaagatttt |
6392578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 6405341 - 6405481
Alignment:
| Q |
21 |
accttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttgtgatgaaggttt |
120 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |||||| |||||||||||||||||| ||| ||||||| ||||| |
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| T |
6405341 |
accttttgtgggggatggatgtcctttgttcgtgataatggcgtcaattttggtgacacatgcatttttgagctcgtttctgattatgtgatgcaggttc |
6405440 |
T |
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| Q |
121 |
atatatctggggttggaaaagaaggtcttgactatcaaaat |
161 |
Q |
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| T |
6405441 |
atatatatggggttggaaaggaaagtattaacaatcaaaat |
6405481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 6339347 - 6339485
Alignment:
| Q |
21 |
accttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttgtgatgaaggttt |
120 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||| |||||| |||| || || ||||| |||||||||||| ||| ||||||| ||||| |
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| T |
6339347 |
accttttgtgggggatggatagcctttgttcgtgataatgacatcaattttggtgatacttgcattttcgagctcgtttctcattatgtgatgcaggttc |
6339446 |
T |
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| Q |
121 |
atatatctggggttggaaaagaaggtcttgactatcaaa |
159 |
Q |
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||||||| ||||||||||| |||||||||||| |||||| |
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| T |
6339447 |
atatatccggggttggaaaggaaggtcttgaccatcaaa |
6339485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 6416852 - 6416992
Alignment:
| Q |
21 |
accttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttgtgatgaaggttt |
120 |
Q |
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|||||||||||||| ||| | ||||||||||| |||||| || || ||||||||||| |||||||||||||||||| ||| ||||||| | ||| |
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| T |
6416852 |
accttttgtgggggttgggtagcctttgttcgtgataataacattaaatttggcgacacatgcatttttgagctcgtttctgattatgtgatgcaagttc |
6416951 |
T |
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| Q |
121 |
atatatctggggttggaaaagaaggtcttgactatcaaaat |
161 |
Q |
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| T |
6416952 |
atatatctggggttggaaaggaaggtcttgaccagcaaaat |
6416992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 6400730 - 6400869
Alignment:
| Q |
22 |
ccttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttgtgatgaaggttta |
121 |
Q |
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|||||||||| || ||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||| |||||| ||||||| ||||||| |
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| T |
6400730 |
ccttttgtggaggttggatggcctttgttcgtgataatggcgtcaattttggcgacacgtgcatttttgagctcgttactaattatgtgatgcaggttta |
6400829 |
T |
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| Q |
122 |
tatatctggggttggaaaagaaggtcttgactatcaaaat |
161 |
Q |
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||||| ||| |||||| |||||| |||| |||||||| |
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| T |
6400830 |
tatatttggatctggaaaggaaggtgctgacaatcaaaat |
6400869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 6363106 - 6363242
Alignment:
| Q |
24 |
ttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttgtgatgaaggtttata |
123 |
Q |
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|||||||||||||||| ||||||||||| ||||||| |||||| |||| || || |||||||||||||||||| ||| | | ||| | ||| || |
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| T |
6363106 |
ttttgtgggggatggaatgcctttgttcgtgataatgacatcaattttggtgatacttgtatttttgagctcgtttctgattatatcatgcaagttcgta |
6363205 |
T |
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| Q |
124 |
tatctggggttggaaaagaaggtcttgactatcaaaa |
160 |
Q |
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| T |
6363206 |
tatctggggttggaaaggaaggtcttgatcatcaaaa |
6363242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 426845 - 426707
Alignment:
| Q |
23 |
cttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttgtgatgaaggtttat |
122 |
Q |
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||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||| |
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| T |
426845 |
cttttgtgggggatgcatggcctttgttcgtaataatgacatcaatcttgacgacacatacatttttgagctcgtttttaattttgtgatgcaggtttat |
426746 |
T |
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| Q |
123 |
atatctggggttggaaaagaaggtcttgactatcaaaat |
161 |
Q |
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|||| ||||||||||||||||||||||||| |||||||| |
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| T |
426745 |
atatatggggttggaaaagaaggtcttgacgatcaaaat |
426707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 426892 - 427042
Alignment:
| Q |
9 |
ggagcagcacagaccttttgtgggggatggatggcctttgttcgcgataatggtatcaatcttggcgacacaataatttttgagctcgtttctaattttg |
108 |
Q |
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|||||| |||| |||||||||||| ||||||||| |||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
426892 |
ggagcaacacacaccttttgtggg--atggatggcttttgttcgtgataatggcatcaatcttgacgacacatgcatttttgagctcgtttctaattttg |
426989 |
T |
|
| Q |
109 |
tgatgaaggtttatatatctggggttggaaaagaaggtcttgactatcaaaat |
161 |
Q |
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||||| || ||||||||| |||||||| ||| |||||||||||| |||||||| |
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| T |
426990 |
tgatgcagatttatatatttggggttgaaaatgaaggtcttgacgatcaaaat |
427042 |
T |
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