View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_1 (Length: 684)
Name: NF5442_low_1
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 20 - 676
Target Start/End: Complemental strand, 49631136 - 49630480
Alignment:
| Q |
20 |
agtttaacatttataaactgaggatataattaatagagcttttaagtaacctgtaaaaactctgctcctggttcaagttcagaacttcggcttgcgacca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49631136 |
agtttaacatttataaactgaggatataattaatagagcttttaagtaacctgtaaaaactctgctcctggttcaagttcagaacttcggcttgcgacca |
49631037 |
T |
|
| Q |
120 |
tttgagaatcagacttgtaaatgtttctagccactgaaaagcttttcagaatgagttttcgcttctgctccagttcctcatttagctttgtggactttgg |
219 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49631036 |
tatgagaatcagacttgtaaatgtttctagccactgaaaagcttttcagaatgagttttcgcttctgctccagttcctcatttagctttgtggactttgg |
49630937 |
T |
|
| Q |
220 |
gatcagtattgagctgctgagttttttctcatacgcaatcacagccttcgcaaattcctatttcacaacaaccaacaaaaatccataatttgtattcctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49630936 |
gatcagtattgagctgctgagttttttctcatacgcaatcacagccttcgcaaattcctatttcacaacaaccaacaaaaatccataatttgtattcctt |
49630837 |
T |
|
| Q |
320 |
ttatcaattttacatgcattgcaaaaagtgtaggaacacaatgtatacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttc |
419 |
Q |
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| T |
49630836 |
ttatcaattttacatgcattgcaaaaagtgtaggaacacaatgtatacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttc |
49630737 |
T |
|
| Q |
420 |
ctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctggag |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49630736 |
ctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctggag |
49630637 |
T |
|
| Q |
520 |
caaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtcctt |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49630636 |
caaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccatgatctgcattttgtcatctacaaaagagtcctt |
49630537 |
T |
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| Q |
620 |
aaaccaatcatgcaaaggggtgttcgccattacatatatcgaatgatgatgtccatc |
676 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
49630536 |
aaaccaatcatgcaaaggggtgtttgccattacatatatcgaatgacgatgtccatc |
49630480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 637
Target Start/End: Original strand, 31651745 - 31651965
Alignment:
| Q |
417 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctg |
516 |
Q |
| |
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|||||||| | ||| |||||||| || | |||||||||||||| |||||||| ||||| ||| || || || ||||| ||||||| ||||||||| | |
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| T |
31651745 |
ttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
31651844 |
T |
|
| Q |
517 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtc |
616 |
Q |
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||||||| |||||||||||||| | || |||||||||||||||||| ||||| || || ||||| ||| || | |||||| |||||| | ||||| || |
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| T |
31651845 |
gagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctattaaccaaaatgtccattttatcatcttccaaagaatc |
31651944 |
T |
|
| Q |
617 |
cttaaaccaatcatgcaaagg |
637 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
31651945 |
cttaaaccaatgatgcaaagg |
31651965 |
T |
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Back To:
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