View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5442_low_10 (Length: 375)

Name: NF5442_low_10
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5442_low_10
NF5442_low_10
[»] chr4 (11 HSPs)
chr4 (32-159)||(10401238-10401365)
chr4 (257-362)||(10401596-10401704)
chr4 (224-272)||(10401532-10401580)
chr4 (227-299)||(30666837-30666909)
chr4 (231-299)||(22318102-22318170)
chr4 (227-299)||(51164605-51164677)
chr4 (227-299)||(52355934-52356006)
chr4 (227-299)||(54317011-54317083)
chr4 (227-278)||(7209220-7209271)
chr4 (224-279)||(54933115-54933170)
chr4 (224-280)||(16692098-16692154)
[»] chr6 (3 HSPs)
chr6 (227-299)||(11753039-11753111)
chr6 (224-298)||(5605248-5605322)
chr6 (227-299)||(12622509-12622581)
[»] scaffold1173 (1 HSPs)
scaffold1173 (224-281)||(181-238)
[»] chr7 (2 HSPs)
chr7 (226-287)||(6271356-6271417)
chr7 (227-287)||(30961633-30961692)
[»] chr3 (5 HSPs)
chr3 (224-281)||(11380244-11380301)
chr3 (224-280)||(54261873-54261929)
chr3 (227-286)||(4239184-4239243)
chr3 (224-281)||(11364859-11364916)
chr3 (258-299)||(50170584-50170625)
[»] chr1 (4 HSPs)
chr1 (227-299)||(19234801-19234873)
chr1 (231-301)||(8243957-8244027)
chr1 (224-282)||(37596534-37596592)
chr1 (229-287)||(42489274-42489332)
[»] chr5 (3 HSPs)
chr5 (224-281)||(38869968-38870025)
chr5 (227-299)||(6825453-6825525)
chr5 (227-279)||(28735367-28735419)
[»] chr8 (5 HSPs)
chr8 (227-299)||(8059906-8059978)
chr8 (227-299)||(8753313-8753385)
chr8 (227-299)||(44328460-44328532)
chr8 (227-279)||(43798699-43798751)
chr8 (227-299)||(44058698-44058770)
[»] chr2 (7 HSPs)
chr2 (227-283)||(4860547-4860603)
chr2 (231-299)||(26051209-26051277)
chr2 (224-283)||(37624956-37625015)
chr2 (227-279)||(34070775-34070827)
chr2 (224-280)||(39187481-39187537)
chr2 (254-299)||(15996816-15996861)
chr2 (258-299)||(21620767-21620808)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 10401238 - 10401365
Alignment:
Q  32 ggagtattggacgtttagatctgctctacagcatgtactatttatgagttgtacttaccctattcatattcattagttgtagttgtaggttctttctacg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||     
T  10401238 ggagtattggacgtttagatctgctctacagcatgtactatttatgagttgtacttaccctattcatattaattaattgtagttgtaggttctttctaca 10401337  T
Q  132 agggttatggtatcttatgtccgtagga 159  Q
    | ||  ||| |||||||||||| |||||    
T  10401338 aagggcatgttatcttatgtccttagga 10401365  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 257 - 362
Target Start/End: Original strand, 10401596 - 10401704
Alignment:
Q  257 ttacatttggtttcttaacttatgcctcaagagcacaaattaatannnnnnnn---aattattggacttcttttttacatgaattattggactttactta 353  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |           ||||||||||||||||||||||||||||||||||||||||||||    
T  10401596 ttacatttggtttcttaacttatgcctcaagggcataaattaacatttttttttttaattattggacttcttttttacatgaattattggactttactta 10401695  T
Q  354 tattctttc 362  Q
    |||||||||    
T  10401696 tattctttc 10401704  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 10401532 - 10401580
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttctt 272  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10401532 gatattgaatgcacaaatttcaataaaaactttttacatttggtttctt 10401580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 30666909 - 30666837
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||||||||||| ||| |||||| || |||||||||||||||||||| ||||||||| |||||| ||||    
T  30666909 attgaatgcacaagttccaaaaaaaaccttctacatttggtttcttaacttgtgcctcaagggcacaagttaa 30666837  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 22318170 - 22318102
Alignment:
Q  231 aatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||| ||| || ||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  22318170 aatgcacaacttttaaaaaaaagtttctacatttggttccttaacttatgccccaagagcacaaattaa 22318102  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 51164605 - 51164677
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||  |||||| ||||| |||  |||||| |||||||||||| ||||||||| |||||| ||||    
T  51164605 attgaatgcacacttttcaagaaaaaatttccacatttagtttcttaacttctgcctcaagggcacaagttaa 51164677  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 52355934 - 52356006
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||| || ||||||||   |  || ||||||||||||||||||||||||||| |||||| ||||    
T  52355934 attgaatgcacaatttccaataaaatactactaaatttggtttcttaacttatgcctcaagggcacaagttaa 52356006  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 54317083 - 54317011
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||||||||||||||  ||||||||  ||||||||  |||||||||||| ||||||  |||||| ||||    
T  54317083 attgaatgcacaagtttcagaaaaaacttactacatttgtcttcttaacttatacctcaatggcacaagttaa 54317011  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 7209271 - 7209220
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaactta 278  Q
    ||||||||||||||||||||  |||||||| |||||||||||| || |||||    
T  7209271 attgaatgcacaagtttcaagcaaaactttctacatttggtttattcactta 7209220  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 54933170 - 54933115
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttat 279  Q
    |||||||||| |||||||| ||| ||||||||| |||||| | |||||||||||||    
T  54933170 gatattgaatacacaagttccaagaaaaactttctacattcgctttcttaacttat 54933115  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 16692154 - 16692098
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatg 280  Q
    |||||||||||||||| |||||| || || |||||| |||||| |||| ||||||||    
T  16692154 gatattgaatgcacaattttcaaaaataaatttttatatttggcttctaaacttatg 16692098  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 11753039 - 11753111
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||| || |||||||||||||||| |||||||||||||||||||| | |||| |||||| ||||    
T  11753039 attgaatgcacaaattccaataaaaactttttatatttggtttcttaacttatgtcccaagggcacaagttaa 11753111  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 5605322 - 5605248
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaatta 298  Q
    |||||||||||||||||||  || |||||| || |||||||| |||||||||||||||| |||  ||||||||||    
T  5605322 gatattgaatgcacaagttaaaagaaaaaccttctacatttgatttcttaacttatgccccaaaggcacaaatta 5605248  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 12622581 - 12622509
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||| || ||| |||||  || ||| ||| ||| |||||||||||||||||| |||||| ||||    
T  12622581 attgaatgcacaatttacaaaaaaaaacttctacttttagttccttaacttatgcctcaagggcacaagttaa 12622509  T

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Target: scaffold1173 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 181 - 238
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgc 281  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||    
T  181 gatattgaatgcacaagtttcaagaaaaactttctacatttgacttcttaacttatgc 238  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 6271356 - 6271417
Alignment:
Q  226 tattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaag 287  Q
    |||||||||||||||||| || ||||||||| |||||||| |||||||||||||||| ||||    
T  6271356 tattgaatgcacaagttttaagaaaaactttctacatttgctttcttaacttatgccccaag 6271417  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 30961633 - 30961692
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaag 287  Q
    ||||||||||||| ||| || |||||  ||||| ||||| |||||||||||||||||||||    
T  30961633 attgaatgcacaacttt-aagaaaaaaattttatatttgttttcttaacttatgcctcaag 30961692  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 11380244 - 11380301
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgc 281  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||    
T  11380244 gatattgaatgcacaagtttcaagaaaaactttctacatttgacttcttaacttatgc 11380301  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 54261873 - 54261929
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatg 280  Q
    ||||||||||||||||||||||| ||||||||| || |||||  |||||||||||||    
T  54261873 gatattgaatgcacaagtttcaagaaaaactttctatatttgtcttcttaacttatg 54261929  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 4239184 - 4239243
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaa 286  Q
    |||||||||||||||| ||| ||||||||| |||||||   || ||||||||||||||||    
T  4239184 attgaatgcacaagttccaagaaaaactttctacatttttcttattaacttatgcctcaa 4239243  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 11364859 - 11364916
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgc 281  Q
    ||||||||||||||||||||||| |||||| || ||| ||||  |||||| |||||||    
T  11364859 gatattgaatgcacaagtttcaaaaaaaaccttctacgtttgacttcttaccttatgc 11364916  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 50170584 - 50170625
Alignment:
Q  258 tacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||||||||||||||| |||| |||||| ||||    
T  50170584 tacatttggtttcttaacttatgccccaagggcacaagttaa 50170625  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 19234873 - 19234801
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||| |||| |||||| ||||    
T  19234873 attgaatgcacaggttccaagaaaaaatttctacatttggtttcttaacttatgccgcaagggcacaagttaa 19234801  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 8243957 - 8244027
Alignment:
Q  231 aatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaata 301  Q
    ||||||||| | |||| ||||||||||||||||||  |||||||||||||| ||||| |||||| ||||||    
T  8243957 aatgcacaaatatcaagaaaaactttttacatttgtcttcttaacttatgcttcaagggcacaagttaata 8244027  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 37596534 - 37596592
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcc 282  Q
    ||||||||||| |||||||||||||||||  |||||| || ||||| ||||||||||||    
T  37596534 gatattgaatgtacaagtttcaataaaaatcttttaccttaggtttgttaacttatgcc 37596592  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 42489274 - 42489332
Alignment:
Q  229 tgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaag 287  Q
    |||||||||||||||||| ||||||||| ||| |||| |||| ||| ||||||||||||    
T  42489274 tgaatgcacaagtttcaagaaaaactttctacgtttgatttcctaatttatgcctcaag 42489332  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 38869968 - 38870025
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgc 281  Q
    ||||||||||||||||||||||| |||||  |||||||||| ||||||||| ||||||    
T  38869968 gatattgaatgcacaagtttcaagaaaaaacttttacatttagtttcttaatttatgc 38870025  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 6825453 - 6825525
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||| |||||| || || ||||||| ||||| || | ||||| ||||| ||| |||||||||||    
T  6825453 attgaatgcacaattttcaaaaataagtttttacgtttggcttttaaacttgtgccttaagggcacaaattaa 6825525  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 28735367 - 28735419
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttat 279  Q
    ||||||||  |||||||||| ||||||||| ||||||||  ||||||||||||    
T  28735367 attgaatgtgcaagtttcaagaaaaactttctacatttgtcttcttaacttat 28735419  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 8059978 - 8059906
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||||||| || |||  ||||  || |||||||||||||||||||||||||||||| |||||| ||||    
T  8059978 attgaatgcacaatttccaagcaaaaacttctacatttggtttcttaacttatgcctcaagggcacaagttaa 8059906  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 8753313 - 8753385
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||| |||||||| || |||||| || ||||||| ||||||||||||||||||| || |||||| ||||    
T  8753313 attgaatgtacaagttttaagaaaaacattctacatttagtttcttaacttatgcctcgagggcacaagttaa 8753385  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 44328532 - 44328460
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||||||||||| ||| |||||| || ||||||||  |||||||||||||| |||||| || |||||||    
T  44328532 attgaatgcacaagttccaagaaaaaccttctacatttgtcttcttaacttatgcttcaagaccataaattaa 44328460  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 43798751 - 43798699
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttat 279  Q
    |||||||||||||||||||  ||||||||  ||||||||  ||||||||||||    
T  43798751 attgaatgcacaagtttcataaaaaacttactacatttgccttcttaacttat 43798699  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 44058770 - 44058698
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    ||||||||  ||| ||| || ||||| ||| |||||||| || |||||||||| || ||||||||||||||||    
T  44058770 attgaatgtccaacttttaagaaaaagtttatacatttgattccttaacttataccccaagagcacaaattaa 44058698  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 4860547 - 4860603
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcct 283  Q
    |||||||||||||||| ||| ||||||||| ||||||||  ||||||||||||||||    
T  4860547 attgaatgcacaagttccaagaaaaactttctacatttgtcttcttaacttatgcct 4860603  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 26051277 - 26051209
Alignment:
Q  231 aatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||||||||||| |||| | || ||||||| ||||||||||||||| | ||||||||||| ||||    
T  26051277 aatgcacaagtttcaagaaaatccttctacatttagtttcttaacttatgtcccaagagcacaagttaa 26051209  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 37625015 - 37624956
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatgcct 283  Q
    |||||||||||||||| |||||||||    ||||||||||||| ||||||||||||||||    
T  37625015 gatattgaatgcacaattttcaataattcttttttacatttggcttcttaacttatgcct 37624956  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 34070827 - 34070775
Alignment:
Q  227 attgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttat 279  Q
    |||||||||||||||||||| |||||  ||||| ||||| |||||||||||||    
T  34070827 attgaatgcacaagtttcaagaaaaatcttttatatttgatttcttaacttat 34070775  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 39187537 - 39187481
Alignment:
Q  224 gatattgaatgcacaagtttcaataaaaactttttacatttggtttcttaacttatg 280  Q
    ||||||||||||||||||||||| |||| | || ||||||||  |||||||||||||    
T  39187537 gatattgaatgcacaagtttcaagaaaaccattctacatttgccttcttaacttatg 39187481  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 15996816 - 15996861
Alignment:
Q  254 tttttacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||| |||||||||||||||||||||||| |||||| |||| ||||    
T  15996816 ttttcacatttggtttcttaacttatgccccaagagtacaagttaa 15996861  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 21620767 - 21620808
Alignment:
Q  258 tacatttggtttcttaacttatgcctcaagagcacaaattaa 299  Q
    |||||||||||||||||||||||||||||  |||||| ||||    
T  21620767 tacatttggtttcttaacttatgcctcaaaggcacaagttaa 21620808  T

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