View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_12 (Length: 365)
Name: NF5442_low_12
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 10024540 - 10024877
Alignment:
| Q |
20 |
aagttgagttgtgtcggctatagaaaggagagaggctttccaagaagacaatttaaatagcttatggtctccctctaaagatagggacacctaagtatat |
119 |
Q |
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| T |
10024540 |
aagttgagttttgtcggctatagaaaggagagaggctttccaagaaggcaatttaaatagcttatggtctccctctaaagatagggacacctaagtatat |
10024639 |
T |
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| Q |
120 |
gaatgcatggaagataaccaatgtttaagcgtagaaaatgaacaagctgagatagtctgctagcattaatggaacc---------agttggcttaaaagg |
210 |
Q |
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| T |
10024640 |
gaatgcatggaagataaccaatgtttaagcgtagcaaatgaacaagctgagatagtctgctagcattaatggaaccagtgtacaaagttggcttaaaagg |
10024739 |
T |
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| Q |
211 |
gttaataatctaaccataacaggctgcataatcaatgaaaagttgtttaagagtcagaaggcaagactttttccctttgcaaaatatcatcacattgtca |
310 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10024740 |
gttaataatctaa----aacaggctgcataatcaatgaaaa---gtttaagagtcagaaggcaagactttttccctttgcaaaatatcatcacattgtca |
10024832 |
T |
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| Q |
311 |
gcataaagtgtgtgagatggcacatgtaagtttcttgtacctttg |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10024833 |
gcataaagtgtgtgagatggcacatgtaagtttcttgtacctttg |
10024877 |
T |
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