View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5442_low_13 (Length: 364)
Name: NF5442_low_13
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 17860070 - 17860419
Alignment:
| Q |
5 |
tccttcagtttaaggtgctgcttaaaagctttagccctagccaaaagagatgggacttcagctaggatcacattcacgctaacataactagactcggatg |
104 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17860070 |
tccttcagtttaagatgctccttaaaagcttcagcccttgccaaatgagatgggacttcagctgggatcacattctcgctaacataactagactcggatg |
17860169 |
T |
|
| Q |
105 |
gagttgcagatggatgaccagaattatgatgttggtcataggcatccttgtaccaattgaacagtttgaacagctgagtatggatcacaacaatcagatc |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17860170 |
gacttgcagatggatgaccagaattatgttgctggtcataggcatccttgtaccaattgaacagtttgaacagctgagtatggatcacagcaatcagatc |
17860269 |
T |
|
| Q |
205 |
agtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17860270 |
agtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagc |
17860369 |
T |
|
| Q |
305 |
ttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17860370 |
ttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
17860419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 34915742 - 34915393
Alignment:
| Q |
5 |
tccttcagtttaaggtgctgcttaaaagctttagccctagccaaaagagatgggacttcagctaggatcacattcacgctaacataactagactcggatg |
104 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34915742 |
tccttcagtttaagatgctccttaaaagcttcagcccttgccaaatgagatgggacttcagctgggatcacattctcgctaacataactagactcggatg |
34915643 |
T |
|
| Q |
105 |
gagttgcagatggatgaccagaattatgatgttggtcataggcatccttgtaccaattgaacagtttgaacagctgagtatggatcacaacaatcagatc |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
34915642 |
gacttgcagatggatgaccagaattatgttgctggtcataggcatccttgtaccaattgaacagtttgaacagctgagtatggatcatagcaatcagatc |
34915543 |
T |
|
| Q |
205 |
agtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915542 |
agtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagc |
34915443 |
T |
|
| Q |
305 |
ttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915442 |
ttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
34915393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 4968601 - 4968950
Alignment:
| Q |
5 |
tccttcagtttaaggtgctgcttaaaagctttagccctagccaaaagagatgggacttcagctaggatcacattcacgctaacataactagactcggatg |
104 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4968601 |
tccttcagtttaagatgctccttaaaagcttcagcccttgccaaatgagatgggacttcagctgggatcacattctcgctaacataactagactcggatg |
4968700 |
T |
|
| Q |
105 |
gagttgcagatggatgaccagaattatgatgttggtcataggcatccttgtaccaattgaacagtttgaacagctgagtatggatcacaacaatcagatc |
204 |
Q |
| |
|
|| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
4968701 |
gacttgcagacggatgaccagaattatgttgctggtcataggcatccttgtaccaattgaacagtttgaatagctgagtatggatcacagcaatcagatc |
4968800 |
T |
|
| Q |
205 |
agtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968801 |
agtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacataactaaacttgtatcgagggtcaagaatcacaccaaagtaaataagc |
4968900 |
T |
|
| Q |
305 |
ttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968901 |
ttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
4968950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University