View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_14 (Length: 359)
Name: NF5442_low_14
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 55242852 - 55242511
Alignment:
| Q |
1 |
caaaattgataagttaaataaatttaaatttggagaatatgagag-atgaatcataataatccgtttaaaagaaaatgtttttgacactgacaatattca |
99 |
Q |
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|||||||||||| ||||||||||||||||||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55242852 |
caaaattgataaattaaataaatttaaatttggataaaatgataggatgaatcaaaataatccgtttaaaagaaaatgtttttgacactgacaatattca |
55242753 |
T |
|
| Q |
100 |
tataattgatgtcaattgatgtcacattaatcttagttcttaatgactctactccaaatggccttgataatgtacacttattgtatgttcttttggtgct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55242752 |
tataattgatgtcaattgatgtcacattaatcttagttcttaatgactctactccaaatggccttgataatgtacacttattgtatgttcttttggtgct |
55242653 |
T |
|
| Q |
200 |
tgcattaattgtcatatgcattattctcgatggtggagttacattagagcgtagaagtggatgtaaaaattcaaatactcctctggttcatcatataagc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55242652 |
tgcattaattgtcatatgcattattctcgatggtggagttacattagagcgtagaagtggatgtaaaaattcaaatactcctctggttcatcatataagc |
55242553 |
T |
|
| Q |
300 |
ccctacttaaatttcatgaatataaaaaatatatgttacttt |
341 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55242552 |
ccctccttaaatttcatgaatataaaaaatatatgttacttt |
55242511 |
T |
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