View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_17 (Length: 339)
Name: NF5442_low_17
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 39080670 - 39080998
Alignment:
| Q |
16 |
ataacatgatataggatgtacaaggaaaatgtgtgaaatatgtcattcataaataacaaacacaattttacctcatttaacgaccaatattatatgcagc |
115 |
Q |
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| T |
39080670 |
ataacatgatataggatgtacaaggaaaatgtg--aaatatgtcattcataaataacaaacacaattttacctcatttaacgaccaatgctatatgcagc |
39080767 |
T |
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| Q |
116 |
ataatttatgattgatatataagnnnnnnncaaagtgggagattctgatgcagtcatctccaaagggtactttcttatataaagacagaaaactc----a |
211 |
Q |
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| T |
39080768 |
ataattgatgattgatatataagaaaaaaacaaagtgggagattctgatgctgtcatctccaaagggtactttcttatataaagacagaaaactcatata |
39080867 |
T |
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| Q |
212 |
gctcaaattttattgtgttgtaattctttttctttattactatattttctaattaataatgtcctcctaa---ctcctgaaaaggaaaatttgttaacca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
39080868 |
gctcaaattttattgtgttgtaattctttttctttattactatattttctaattaataatgtcctcctaactcctcctgaaaaggaaaatttgttaacta |
39080967 |
T |
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| Q |
309 |
attaatcagttatttatgtaatggtatacta |
339 |
Q |
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| T |
39080968 |
attaatcagttatttatgtaatggtatacta |
39080998 |
T |
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