View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5442_low_2 (Length: 632)
Name: NF5442_low_2
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_2 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 23348992 - 23348413
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348992 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
23348893 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23348892 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
23348793 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348792 |
ggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
23348693 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23348692 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcag |
23348593 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348592 |
ccaggtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
23348497 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgt |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23348496 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt |
23348413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 12741797 - 12742372
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12741797 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
12741896 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12741897 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
12741996 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12741997 |
ggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
12742096 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
12742097 |
cgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcag |
12742196 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742197 |
caaggtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
12742292 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12742293 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat |
12742372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 18355325 - 18354703
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18355325 |
taagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
18355226 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18355225 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
18355126 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18355125 |
ggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccatctcactctcagacattcaaacaaaattctctgccgttgc |
18355026 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| || |||||| |
|
|
| T |
18355025 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgctgttgttgtctgcggcgtcgtatcag |
18354926 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctac--nnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtt |
498 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18354925 |
tcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgttcctgtagcttttccctaactttgttattccattacatttttggtttgtt |
18354826 |
T |
|
| Q |
499 |
tgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatc--atgtgtannnnnnnncaa |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
18354825 |
tgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtattttttttcaa |
18354726 |
T |
|
| Q |
597 |
atacaccaatatgtccattgatg |
619 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
18354725 |
acacaccaatatgtccattgatg |
18354703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 10328904 - 10328626
Alignment:
| Q |
1 |
taagcatgcatctcatccttt-gatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcc |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328904 |
taagcatgcatctcatccttttgatctaatctgagtcaaatttgaaaatttgat------ttcctatgcacttatccaagttttgactcattaattatcc |
10328811 |
T |
|
| Q |
100 |
tcaaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgt |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10328810 |
tccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgt |
10328711 |
T |
|
| Q |
200 |
tggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaa |
284 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328710 |
tggaatttagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaa |
10328626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 436 - 585
Target Start/End: Complemental strand, 10328606 - 10328457
Alignment:
| Q |
436 |
cctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttacca |
535 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328606 |
cctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttacca |
10328507 |
T |
|
| Q |
536 |
tcatgtattatgctattaataaattgattgatactttaaaatcatgtgta |
585 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328506 |
tcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta |
10328457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1615927 - 1615862
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1615927 |
taagcatgcatctcatcctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
1615862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 24454631 - 24454693
Alignment:
| Q |
9 |
catctcatcctttgatctaatctga-gtcaaattttcaaatttgatgtatatttcctatgcac |
70 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
24454631 |
catctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttcctatgcac |
24454693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 43071394 - 43070778
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43071394 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
43071295 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43071294 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
43071195 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43071194 |
ggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
43071095 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43071094 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcag |
43070995 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070994 |
ccaggtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
43070899 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatc--atgtgtannnnnnnncaaat |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
43070898 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtattttttttcaaac |
43070799 |
T |
|
| Q |
599 |
acaccaatatgtccattgatg |
619 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43070798 |
acaccaatatgtccattgatg |
43070778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1262197 - 1262601
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262197 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
1262296 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttt-taagttctcttctctcctcttccattattccttctttatgtgt |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1262297 |
ccaattcccaaattgactccacacttatcgatgttcacctctttctccttcattttttaagttctcttctctcctctcccattattccttctttatgtgt |
1262396 |
T |
|
| Q |
200 |
tggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttg |
299 |
Q |
| |
|
||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262397 |
tggaattcatattgcttttactcgaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttg |
1262496 |
T |
|
| Q |
300 |
ccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatca |
399 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
1262497 |
ccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtatgcggcatcgtatca |
1262596 |
T |
|
| Q |
400 |
gccag |
404 |
Q |
| |
|
||||| |
|
|
| T |
1262597 |
gccag |
1262601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 48849819 - 48849586
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48849819 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
48849720 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcat-ttttaagttctcttctctcctcttccattattccttctttatgtgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
48849719 |
caaattcccaaattgactccacacttatcgatgttcacctctttctccttcattttttaagttctcttctctcatctcccattattccttctttatgtgt |
48849620 |
T |
|
| Q |
200 |
tggaattcagattgtttttactcaaaaaattctc |
233 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |
|
|
| T |
48849619 |
tggaattcagattgcttttactcaaaaaaatctc |
48849586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 210 - 404
Target Start/End: Complemental strand, 48849585 - 48849391
Alignment:
| Q |
210 |
attgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctc |
309 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48849585 |
attgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctc |
48849486 |
T |
|
| Q |
310 |
tgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcagccag |
404 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48849485 |
cgtcgccgcagctctctcctttcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag |
48849391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26909993 - 26909806
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
26909993 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttattcaagttttgactc----attatcct |
26909898 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaa-gttctcttctctcctcttccattattccttct |
191 |
Q |
| |
|
| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
26909897 |
ccaattcccagattgactccacacttatccatgcccacctttttctccttcatttttaacgttctcttttctcctctcccattattccttct |
26909806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 7473501 - 7472922
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7473501 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattagttatcct |
7473402 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7473401 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
7473302 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473301 |
ggaatttagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgt |
7473202 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7473201 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcag |
7473102 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473101 |
ccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
7473002 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7473001 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat |
7472922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 9043911 - 9044486
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9043911 |
taagcatgcatctcatcctttgatctaatctgagtcaaatttttaaatttgatgtatatttcctatgcatttatccaagttttgactcattaattatcct |
9044010 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9044011 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
9044110 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044111 |
ggaattcagattgcttttactcaaaaaaatttcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
9044210 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
9044211 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgatttcgacatcaccttcgtcgttgtcgtctgcagcatcgtatcag |
9044310 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044311 |
ccaagtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
9044406 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9044407 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat |
9044486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 30442559 - 30441983
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30442559 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttttccaagttttgactcattaattatcct |
30442460 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
30442459 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcattttaaagttctcttctctccactctcattattccttctttatgtgtt |
30442360 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaa-aaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttg |
299 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30442359 |
ggaattcagattgcttttactcaaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgtcgttg |
30442260 |
T |
|
| Q |
300 |
ccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatca |
399 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30442259 |
ccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttggccgttgtcgtctgcggcatcgtatca |
30442160 |
T |
|
| Q |
400 |
gccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt |
499 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30442159 |
gccatatgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt |
30442064 |
T |
|
| Q |
500 |
gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
30442063 |
gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatactttaaaatcat |
30441983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 22009540 - 22009359
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
22009540 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgctcttatccaagttttga-------------ct |
22009454 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaa-gttctcttctctcctcttccattattccttcttta |
194 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||| || |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
22009453 |
ccaattcccaaattgactccacacttatcgatgccaacctttttctccttccttttcaactttctgttctctcctctcccattattccttcttta |
22009359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 19085241 - 19085180
Alignment:
| Q |
97 |
tcctcaaattcccaaattgactccacacttatcgatgtccacctttttctccttcattttta |
158 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
19085241 |
tcctccaattcccatattgactccacacttatcgatacccacctctttctcctccattttta |
19085180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
| Q |
464 |
ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat |
546 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||| | |||||| ||||||||| ||||||||||| || ||||||||| |
|
|
| T |
40163917 |
ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat |
40163996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 19882123 - 19881544
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19882123 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaaattttgactcattaattatcct |
19882024 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19882023 |
ccaattcccaaattgactccacatttatcgatgtccacctctttctccttcatttttaagttatcttctctcctctcccattattccttctttatgtgtt |
19881924 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19881923 |
ggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgtcgttgc |
19881824 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19881823 |
cgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcag |
19881724 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881723 |
ccaggtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
19881628 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgt |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19881627 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt |
19881544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 53973298 - 53972718
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53973298 |
taagcctgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaaattttgactcattaattatcct |
53973199 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
53973198 |
ccaattctcaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttttcttctctcctctcccattattcattctttatgtgtt |
53973099 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
53973098 |
ggaattcagattgcttttactcaaaaaaatctcttctccctttgagttgttcatcttccacctcactctcagacatttaaacaaaattctctgtcgttgc |
53972999 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
53972998 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcactttcgtcgttgtcgtctgcggcatcgtatcag |
53972899 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972898 |
ccaagtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
53972803 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972802 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta |
53972718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 37982458 - 37982881
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac---ttatccaagttttgactcattaattat |
97 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37982458 |
taagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacgtcttatccaagttttgactcattaattat |
37982557 |
T |
|
| Q |
98 |
cctcaaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgt |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37982558 |
cctccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgt |
37982657 |
T |
|
| Q |
198 |
gttggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgt |
297 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37982658 |
tttggaattcagattgcttttactcaaaaaaatctcttcgccctctgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgtcgt |
37982757 |
T |
|
| Q |
298 |
tgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatat |
397 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |
|
|
| T |
37982758 |
tgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtat |
37982857 |
T |
|
| Q |
398 |
cagccaggtgtgttgaagatgcta |
421 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37982858 |
cagccaggtgtgttgaagatgcta |
37982881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 31685186 - 31685575
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31685186 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttattcaagttttgactcattaattatcct |
31685285 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31685286 |
ccaattctcaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttcttttctctcctcttccattattccttctttatgtgtt |
31685385 |
T |
|
| Q |
201 |
ggaattcagattgtttttactc-aaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttg |
299 |
Q |
| |
|
|||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
31685386 |
ggaattcaaattgcttttactcaaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattatatgccgtt- |
31685484 |
T |
|
| Q |
300 |
ccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31685485 |
--------------gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatca |
31685570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 436 - 585
Target Start/End: Original strand, 37982948 - 37983097
Alignment:
| Q |
436 |
cctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttacca |
535 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982948 |
cctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttacca |
37983047 |
T |
|
| Q |
536 |
tcatgtattatgctattaataaattgattgatactttaaaatcatgtgta |
585 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983048 |
tcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta |
37983097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17681875 - 17681938
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatc-tgagtcaaattttcaaatttgatgtatatttcc |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
17681875 |
taagcatgcatctcatcctttgatctaatcttgagtcaaatttttaaatttaatgtatatttcc |
17681938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
| Q |
337 |
cccttcaccaatgctctcgattccgacttcaccttcgccgttgtcg |
382 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
17682201 |
cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg |
17682246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
| Q |
337 |
cccttcaccaatgctctcgattccgacttcaccttcgccgttgtcg |
382 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19766443 |
cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg |
19766488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2550045 - 2550079
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagt |
35 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
2550045 |
taagcatgcatctcatcctttgatttaatctgagt |
2550079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 763 - 1343
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
763 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaaattttgactcattaattatcat |
862 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
863 |
tcaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
962 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
963 |
ggaattcaaattgcttttactcaaaaaaatctcttctccctttgagttgttcatcttccacctcactctcagacatttaaacaaaattctctgccgttgc |
1062 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1063 |
cgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcactttcgccgttgtcgtctgcggcatcgtatcag |
1162 |
T |
|
| Q |
401 |
ccaggtgtgttgaagatgctacnnnnnnnnnnnnncctaaatcgctgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163 |
ccaggtgtgttgaagatgctac----tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttg |
1258 |
T |
|
| Q |
501 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
1259 |
taagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatattttaaaatcatgtgta |
1343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 31100884 - 31100480
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31100884 |
taagcatgtatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
31100785 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31100784 |
ccaattcccaaattgactccacacttatcgatgcccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
31100685 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
31100684 |
ggaattcagattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctttgccgtcgc |
31100585 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
31100584 |
cactctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgccgttgtcgtctgtggcatcgtatcat |
31100485 |
T |
|
| Q |
401 |
ccagg |
405 |
Q |
| |
|
||||| |
|
|
| T |
31100484 |
ccagg |
31100480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 14678033 - 14677630
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14678033 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctatgcacttatccaagttttgactcattaattatcat |
14677934 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14677933 |
ccaattcccaaattgactccacacttatc-atgtccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
14677835 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14677834 |
gaaattcagattgcttttactcaaaaaaatctctttcccctttgagttgttcatcttccacctcactctcagacattcaaacaaaatcctctgccgttgc |
14677735 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
14677734 |
cgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcagcatcgtatcag |
14677635 |
T |
|
| Q |
401 |
ccagg |
405 |
Q |
| |
|
||||| |
|
|
| T |
14677634 |
ccagg |
14677630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 5657880 - 5658268
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5657880 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
5657979 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5657980 |
ccaattcccaaattgactccacacttatcgatgcccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
5658079 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5658080 |
ggaattcagattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctttgcc----- |
5658174 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5658175 |
----------gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctcttgattccaacatcaccttcgccgttgtcgtctgtggcatcgtatcat |
5658264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 97 - 333
Target Start/End: Complemental strand, 33689215 - 33688978
Alignment:
| Q |
97 |
tcctcaaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaa-gttctcttctctcctcttccattattccttctttat |
195 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||| || |||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33689215 |
tcctccaatttccatattgactccacacttatccatacccacctctttctccttcattgttaacgttctcttctctcctctcccattattccttctttac |
33689116 |
T |
|
| Q |
196 |
gtgttggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaa-aattctctgc |
294 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||| | |
|
|
| T |
33689115 |
tttttggaattcagattgcttttactcaaaaaaatctcttc-ccctttgagttgttcatcttccacctcactcttagacattcaaacaagacttctctcc |
33689017 |
T |
|
| Q |
295 |
cgttgccgctctctctgtcgccgcagctctctcctgtcg |
333 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
33689016 |
catcgccgctctctccgtcgccgcagctctctcatgtcg |
33688978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27541571 - 27541502
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27541571 |
taagcatgcatctcatcctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcac |
27541502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 405
Target Start/End: Complemental strand, 29863371 - 29862969
Alignment:
| Q |
3 |
agcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcctca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29863371 |
agcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcttatgcacttatccaagttttgactcattaattatcctcc |
29863272 |
T |
|
| Q |
103 |
aattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgttgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| | |
|
|
| T |
29863271 |
aattcccaaattgactccacacttatcgatgtccacctctttctccttcattttttagttctcttatctcctctcccattattccttctttatgtgttag |
29863172 |
T |
|
| Q |
203 |
aattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgccg |
302 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
29863171 |
aattcagattgcttttactcaaaaaaatctctttcccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgtcgctgccg |
29863072 |
T |
|
| Q |
303 |
ctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcagcc |
402 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |||||||| |
|
|
| T |
29863071 |
ctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgctctcgattccgacatcacttttgccgttgtcatctgcggcatcgtatcagcc |
29862972 |
T |
|
| Q |
403 |
agg |
405 |
Q |
| |
|
||| |
|
|
| T |
29862971 |
agg |
29862969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 35172 - 35574
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35172 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
35271 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |
|
|
| T |
35272 |
ccaattcccaaattaactccacacttatcgatgtccacctttttctccttcatttttaagttctc--ctctcctctcccattattccttctttatgagtt |
35369 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370 |
ggaattcagattgcttttactcaaaaaaatcgttttcccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
35469 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
35470 |
tgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgctctcgattctgacatcaccttcgccgttgtcgtttgcggcatcgtatcag |
35569 |
T |
|
| Q |
401 |
ccagg |
405 |
Q |
| |
|
||||| |
|
|
| T |
35570 |
ccagg |
35574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 11646 - 11242
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11646 |
taagcatgcatctcatcctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattcattatcct |
11547 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11546 |
ccaattcccaaattgactccacacttattgatgcccacctctttctccttcatttttaagttctcttctctcctctcccattattccttctttatgtgtt |
11447 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| ||||||||||| || || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || | |
|
|
| T |
11446 |
ggaattcagattgcttttactcaaacaaatcccttccccctttgagttgttcatcttccacctcactcccagacattcaaacaaaattctttgttgtcac |
11347 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
11346 |
cgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgctctcgaatccgacatcaccttcgccgttgtcgtctgcggcattgcatcag |
11247 |
T |
|
| Q |
401 |
ccagg |
405 |
Q |
| |
|
||||| |
|
|
| T |
11246 |
ccagg |
11242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 33045443 - 33045054
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33045443 |
taagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcct |
33045344 |
T |
|
| Q |
101 |
caaattcccaaattgactccacacttatcgatgtccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgtt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
33045343 |
ccaattcccaaattgactccacacttatcgatgtccacctctttctccttcatttttaagttctcttgtctcctctcccattattccttctttatgtgtt |
33045244 |
T |
|
| Q |
201 |
ggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |
|
|
| T |
33045243 |
ggaattcagattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttcaacctcactctcagacattcaaacaaaattctttgtc----- |
33045149 |
T |
|
| Q |
301 |
cgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
33045148 |
----------gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggcatcgtatcat |
33045059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 35 - 405
Target Start/End: Original strand, 10092641 - 10092985
Alignment:
| Q |
35 |
tcaaattttcaaatttgatgtatatttcctatgcacttatccaagttttgactcattaattatcctcaaattcccaaattgactccacacttatcgatgt |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
10092641 |
tcaaactttcaaatttgatgtatatttcctatgcacctatccaagttttgattcattagttatcctccaatttccaaattgactccacacttatcgatgt |
10092740 |
T |
|
| Q |
135 |
ccacctttttctccttcatttttaagttctcttctctcctcttccattattccttctttatgtgttggaattcagattgtttttactcaaaaaattctct |
234 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
10092741 |
ccacctctttctccttcatttttaag-----ttctctcctctcccattattccttctttatgtgttggaattcaaattgcttttactcaaaaaaatctct |
10092835 |
T |
|
| Q |
235 |
tcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgt |
334 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
10092836 |
t--ccctttaagttgttcatcttccacctcactctcagacattcaaacaaaattctctaacgtcgccgctctct-------------------ctgtcgt |
10092914 |
T |
|
| Q |
335 |
cgcccttcaccaatgctctcgattccgacttcaccttcgccgttgtcgtctgcggcatcatatcagccagg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10092915 |
cgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccagg |
10092985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 200 - 338
Target Start/End: Complemental strand, 22001126 - 22000988
Alignment:
| Q |
200 |
tggaattcagattgtttttactcaaaaaattctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttg |
299 |
Q |
| |
|
||||||| | |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
22001126 |
tggaatttatattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttccacctcactttcagacattcaaacaaaattctctgtcgttg |
22001027 |
T |
|
| Q |
300 |
ccgctctctctgtcgccgcagctctctcctgtcgtcgcc |
338 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22001026 |
ccgctctctccgtcgccgcagctctctcctgtcgtcgcc |
22000988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 30908233 - 30908172
Alignment:
| Q |
97 |
tcctcaaattcccaaattgactccacacttatcgatgtccacctttttctccttcattttta |
158 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
30908233 |
tcctccaattctcatattgactccacacttatcgatacccacctctttctcctccattttta |
30908172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 8976517 - 8976545
Alignment:
| Q |
5 |
catgcatctcatcctttgatctaatctga |
33 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8976517 |
catgcatctcatcctttgatctaatctga |
8976545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 50991164 - 50991224
Alignment:
| Q |
97 |
tcctcaaattcccaaattgactccacacttatcgatgtccacctttttctccttcattttta |
158 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||| |||||| |||||||| |||||||| |
|
|
| T |
50991164 |
tcctccaattcccatattgactccacacttttcgat-accacctctttctcctccattttta |
50991224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27518 - 27546
Alignment:
| Q |
1 |
taagcatgcatctcatcctttgatctaat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27518 |
taagcatgcatctcatcctttgatctaat |
27546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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