View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5442_low_22 (Length: 309)
Name: NF5442_low_22
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 48558346 - 48558066
Alignment:
| Q |
12 |
tattacatcaatttctctcctattgaaaatgtcgagtaacggaacaatctcaacacatgctaaactttcaaagatcaaagcacgctttttcataattgca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48558346 |
tattacatcaatttctctcctattgaaaatgtcgagtaatggaacaatctcaacacatgctaaactttcaaagatcaaagcacgctttttcataattgca |
48558247 |
T |
|
| Q |
112 |
aagaaaatgctaaacttttatagatcaatgcacgcaatggtcatggagtcaaggttttgctctccacctgaccccgcctccgaaaacccactccattgtc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
48558246 |
aagaaaatgctaaacttttatagatcaaagcacgcaatggtcatggagtcaaggttttgctctccacctgaacccgcctcccaaaacccactccattgtc |
48558147 |
T |
|
| Q |
212 |
accaaaataaaaattaggtacccgaccctgtcctaatcggtgttctgtaaaactccccctaccgccacttccttccttttg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
48558146 |
accaaaataaaaattaggtacccgaccctgtcctaatcggtgttctgtaaaacccaccctaccaccacttccttccttttg |
48558066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University