View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_25 (Length: 292)
Name: NF5442_low_25
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 48275588 - 48275852
Alignment:
| Q |
13 |
aatatagttcaccttcttaaccttcccttgtattttgatttgaaataacgttacactttaatttttatcatctgcaagattcttcctccacacaacaacg |
112 |
Q |
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| T |
48275588 |
aatatagttcaccttcttaaccttcccttgtattttgatttgaaataacgttacactttaatttttatcatctgcaagattcttcctcaacacaacaacg |
48275687 |
T |
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| Q |
113 |
tgtgactgttgattctctcctaaattctgaaccaaaaggtacctttcaaccttaacatggaacggtgtatattttacttcnnnnnnncaaatttttctta |
212 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48275688 |
tgtgacggttgattctctcctaaattctgaaccaaaaggtacctttcaaccttaacatggaacggtgtatattttacttatttttttcaaatttttctta |
48275787 |
T |
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| Q |
213 |
ttctaaattctaaacatccaaattatttactacattacattaaacaatgttttttgacggttagt |
277 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48275788 |
ttataaattctaaacatccaaattatttactacattacattaaacaatgttttttgacggttagt |
48275852 |
T |
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