View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_27 (Length: 288)
Name: NF5442_low_27
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 50407351 - 50407559
Alignment:
| Q |
1 |
aggaattcaaattaactaattaagtaaaggtttatttctnnnnnnnnnnngtgctaaggtttagagaaacacttattatagatatatttaaaagtattct |
100 |
Q |
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|||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407351 |
aggatttcaaattaactaactaagtaaaggtttatttc-aaaaaaaaaaagtgctaaggtttagagaaacacttattatagatatatttaaaagtattct |
50407449 |
T |
|
| Q |
101 |
caaaaaataaaattacgagaactttatatggataacttgtgcaattgtagagtatctnnnnnnnnntaatcaattgagtacttacgcaattgaaccaacc |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50407450 |
caaaaaataaaattacgagaactttatatcgataactagtgcaattgtagagtatctata-------aatcaattgagtacttacgcaattgaaccaacc |
50407542 |
T |
|
| Q |
201 |
tttattgacatgagata |
217 |
Q |
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||||||||||||||||| |
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| T |
50407543 |
tttattgacatgagata |
50407559 |
T |
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