View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_3 (Length: 606)
Name: NF5442_low_3
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 32811424 - 32811738
Alignment:
| Q |
1 |
ttaaccattgagattgaataatactactactactctttggtcctccaattaagcaacacacatactatat--gataagcatgctgccctgtcgttgttag |
98 |
Q |
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| T |
32811424 |
ttaaccagcgagattgaataatactactact---ctttggtcctccc--taagcaacacacatactatatatgataagcatgctgccctgtcgttgttag |
32811518 |
T |
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| Q |
99 |
attcaaaaggaaagatgtgcttgtacggataaagtagcaaatctcattggtatgtgaaattttcttcactattttagaggcagtgttaagatcgttatat |
198 |
Q |
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| T |
32811519 |
atccaaa-ggaaagatgtgcttgtacggataaagtagcaaatctcattggtatgtgaaattttcttcactattttagaggcagtgttaatatcgttatat |
32811617 |
T |
|
| Q |
199 |
gaacacgcatttgtgcaacagtgcaaggggtaaataatttaggtgatttaagtaagtggtcataaatttgattcttaactcttgtgtatggaaacaatca |
298 |
Q |
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| T |
32811618 |
gaacaagcatttgtgcaacagtgcaaggggtaaataatttaggtgatttaagtaagtggtcataaatttgattcttaactcttgcgtatggaaacaatcc |
32811717 |
T |
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| Q |
299 |
agttgaaagggaagaatatat |
319 |
Q |
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|||||||||||||||||||| |
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| T |
32811718 |
ggttgaaagggaagaatatat |
32811738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 308 - 593
Target Start/End: Original strand, 32811759 - 32812038
Alignment:
| Q |
308 |
ggaagaatatattttgtgtgccgcatagattctttaatgaagattgatcatcgataaacgacggtggaaacttcatgagaataacatggtaatnnnnnnn |
407 |
Q |
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| T |
32811759 |
ggaagaatatattttgtgtgccgcatagattctttaatgaagattggtcatcgataaacgacggtggaaacttcatgaggataacatggtaataataaaa |
32811858 |
T |
|
| Q |
408 |
nnnnnnnnngatgatatgtttttcaagtgagtcaacgtgtgatgaagaaaagataaaatgatagttagagatgatgcatttgaggaaataatgaacatag |
507 |
Q |
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| T |
32811859 |
aaaa------atgataggtttttcaagtgagtcaacgtgtgatgaagaaaagataaaatgatagttagagatgatgcatttgaggaaataatgaacatag |
32811952 |
T |
|
| Q |
508 |
tttttatagaagtgtttatattcaaacttatcaaactaaaaccgcaaataaacttaaatcgtacaaaattaaatattattggatat |
593 |
Q |
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| T |
32811953 |
tttttataggagtgtttatattcaaactgatcaaactaaaacagcaaataaactttaatagtacaaaattaaatattattggatat |
32812038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 507
Target Start/End: Original strand, 3719192 - 3719253
Alignment:
| Q |
446 |
gtgatgaagaaaagataaaatgatagttagagatgatgcatttgaggaaataatgaacatag |
507 |
Q |
| |
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|||| ||||| |||| |||||| |||||| ||||||||||||| ||||||||||||| |||| |
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| T |
3719192 |
gtgacgaagagaagaaaaaatgctagttacagatgatgcattttaggaaataatgaaaatag |
3719253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 27794307 - 27794250
Alignment:
| Q |
445 |
tgtgatgaagaaaagataaaatgatagttagagatgatgcatttgaggaaataatgaa |
502 |
Q |
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| T |
27794307 |
tgtgatggagagaagatgaaaagatagctagagatgatgcatttctggaaataatgaa |
27794250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 27202416 - 27202480
Alignment:
| Q |
445 |
tgtgatgaagaaaagataaaatgatagttagagatgatgcatttgaggaaataatgaacatagtt |
509 |
Q |
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||||||||||| | |||||| || ||| ||| |||||||||||| |||||||||||| |||||| |
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| T |
27202416 |
tgtgatgaagagacgataaattgctagatagggatgatgcatttatggaaataatgaaaatagtt |
27202480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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