View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_38 (Length: 239)
Name: NF5442_low_38
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8964126 - 8963903
Alignment:
| Q |
1 |
taaaaaatcatctaattagtcaataccttaaacagaattcaccagtaagaaagttcaatcatatactaatattaaagttcaaatgtcatatattgtactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964126 |
taaaaaatcatctaattagtcaataccttaaacagaattcaccagtaagaaagttcaatcatatactaatattaaagttcaaatgtcatatattgtactc |
8964027 |
T |
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| Q |
101 |
agcatcacattatacacttcttgccttttg--nnnnnnnccaccctgaaatggacttgtaattttgggatcaggacaacatttctattaaaagttactgc |
198 |
Q |
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| T |
8964026 |
agcatcacattataatcttcttgccttttgaaaaaaaaaccaacctgaaatggacttgtaattttgggatcaggacaacatttctattaaaagttactgt |
8963927 |
T |
|
| Q |
199 |
ctagattaaatagttataaaggtt |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8963926 |
ctagattaaatagttataaaggtt |
8963903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 8975457 - 8975413
Alignment:
| Q |
173 |
acaacatttctattaaaagttactgcctagattaaatagttataa |
217 |
Q |
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|||| ||||||||||||||||||| | || ||||||||||||||| |
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| T |
8975457 |
acaaaatttctattaaaagttacttcataaattaaatagttataa |
8975413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 16727851 - 16727962
Alignment:
| Q |
1 |
taaaaaatcatctaattagtcaataccttaaacagaattcaccagtaagaaagttcaatcatatactaatattaaagttcaaatgtcatatattgtactc |
100 |
Q |
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|||||||||||||||||||| | |||||||||| ||||||||| || |||| ||||| ||||||||||||| || ||||||||||| ||||| ||||| |
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| T |
16727851 |
taaaaaatcatctaattagttgacaccttaaacataattcaccaataggaaaattcaaacatatactaatataaatgttcaaatgtc--atattttactc |
16727948 |
T |
|
| Q |
101 |
agcatcacattata |
114 |
Q |
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|||||||||||||| |
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| T |
16727949 |
agcatcacattata |
16727962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 17009083 - 17009161
Alignment:
| Q |
139 |
caccctgaaatggacttgtaattttgggatcaggacaacatttctattaaaagttactgcctagattaaatagttataaa |
218 |
Q |
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||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17009083 |
caccctgaaatcgacttgtaatcttgg-attaggacaacatttctattaaaagttactgcaaagattaaatagttataaa |
17009161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 17008937 - 17009040
Alignment:
| Q |
25 |
accttaaacagaattcaccagtaagaaagttcaatcatatactaatattaaagttcaaatgtcatatattgtactcagcatcacattatacacttcttgc |
124 |
Q |
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|||||||||| ||||||||| || |||| ||||| ||||||||||||| || ||||||||||| ||||| ||||||||||||||||||| |||||| | |
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| T |
17008937 |
accttaaacataattcaccaataggaaaattcaaacatatactaatataaatgttcaaatgtc--atattttactcagcatcacattataatcttcttac |
17009034 |
T |
|
| Q |
125 |
cttttg |
130 |
Q |
| |
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|||||| |
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|
| T |
17009035 |
cttttg |
17009040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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