View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5442_low_39 (Length: 238)

Name: NF5442_low_39
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5442_low_39
NF5442_low_39
[»] chr7 (3 HSPs)
chr7 (1-221)||(48252672-48252892)
chr7 (7-118)||(41238751-41238858)
chr7 (10-80)||(43598751-43598821)
[»] chr2 (5 HSPs)
chr2 (1-221)||(32914243-32914463)
chr2 (171-221)||(3954300-3954350)
chr2 (10-94)||(9104673-9104757)
chr2 (10-49)||(6859094-6859133)
chr2 (6-46)||(39375667-39375707)
[»] chr4 (3 HSPs)
chr4 (1-175)||(52326839-52327013)
chr4 (10-80)||(46381942-46382012)
chr4 (10-66)||(7473747-7473804)
[»] chr5 (3 HSPs)
chr5 (7-195)||(14947829-14947999)
chr5 (10-44)||(39060299-39060333)
chr5 (7-48)||(4925166-4925207)
[»] chr1 (7 HSPs)
chr1 (3-134)||(7167877-7167999)
chr1 (167-221)||(7167825-7167879)
chr1 (7-49)||(37457723-37457765)
chr1 (5-48)||(19322777-19322820)
chr1 (10-75)||(27641621-27641686)
chr1 (7-48)||(51613354-51613394)
chr1 (7-47)||(1035844-1035884)
[»] chr8 (1 HSPs)
chr8 (11-165)||(35158976-35159129)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48252892 - 48252672
Alignment:
Q  1 ccactctccaaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaag 100  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48252892 ccactctccaaaactctaaaataggtaccactaatcttccaatatacttcaattttatattttaaactaataaaattttgataaaaggtgaaaaaggaag 48252793  T
Q  101 agaatggcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattagcagtgtccaagcagtatccaaactgacacacacag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  48252792 agaatggcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattaccagtgtccaagcagtatccaaactgccacacacag 48252693  T
Q  201 gcacacgttggcaataccact 221  Q
    |||||||||||||||||||||    
T  48252692 gcacacgttggcaataccact 48252672  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 41238858 - 41238751
Alignment:
Q  7 tccaaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaagagaatg 106  Q
    ||||||| |||||||| || |||| |||| |||||||||||| ||| ||||||||||||| || |||||||||||  |||||||| || |||||||||||    
T  41238858 tccaaaattttaaaat-ggccccattaattttacaatatactacaaatttatattttaaatta-taaaatattga--aaaggtgagaagggaagagaatg 41238763  T
Q  107 gcaccgttgcca 118  Q
     |||||||||||    
T  41238762 acaccgttgcca 41238751  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 43598821 - 43598751
Alignment:
Q  10 aaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattg 80  Q
    |||||||||||||  ||| |||| || | |||||||||| ||| ||||||||||| | |||||||||||||    
T  43598821 aaaactttaaaatgagtctcacttatttcacaatatactccaaatttatattttacattaataaaatattg 43598751  T

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Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32914463 - 32914243
Alignment:
Q  1 ccactctccaaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaag 100  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914463 ccactctcaaaaactctaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaag 32914364  T
Q  101 agaatggcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattagcagtgtccaagcagtatccaaactgacacacacag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||     
T  32914363 agaatggcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattaccagtgttcgagcagtatccaaactgacacacacat 32914264  T
Q  201 gcacacgttggcaataccact 221  Q
    ||||||||||| |||||||||    
T  32914263 gcacacgttggtaataccact 32914243  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 3954300 - 3954350
Alignment:
Q  171 tccaagcagtatccaaactgacacacacaggcacacgttggcaataccact 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954300 tccaagcagtatccaaactgacacacacaggcacacgttggcaataccact 3954350  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 9104673 - 9104757
Alignment:
Q  10 aaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaa 94  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||| ||| | ||||||| ||||||||||| | |||||||||||||    
T  9104673 aaaattttaaaatgggttccattaatcttacaatatacaccaactttgtgttttaaattaataaaatatagttaaaaggtgaaaa 9104757  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 6859094 - 6859133
Alignment:
Q  10 aaaactttaaaataggtcccactaatcttacaatatactt 49  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  6859094 aaaactttaaaataggtctcacttatcttacaatatactt 6859133  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 39375707 - 39375667
Alignment:
Q  6 ctccaaaactttaaaataggtcccactaatcttacaatata 46  Q
    |||||||| ||||||| |||||||||| |||||||||||||    
T  39375707 ctccaaaattttaaaacaggtcccacttatcttacaatata 39375667  T

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Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 52327013 - 52326839
Alignment:
Q  1 ccactctccaaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaag 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  52327013 ccactctccaaaactctaaaataggtcccactaatcttacaatatacttcaattttatattttcaactaataaaatattgataaaagatgaaaaaggaag 52326914  T
Q  101 agaatggcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattagcagtgtccaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52326913 agaatggcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattagcagtatccaa 52326839  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 46382012 - 46381942
Alignment:
Q  10 aaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattg 80  Q
    ||||||||||||| ||||||||| || | | |||||||| ||| ||||||||||| | |||||||||||||    
T  46382012 aaaactttaaaatgggtcccacttatttcaaaatatactccaaatttatattttacattaataaaatattg 46381942  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 7473747 - 7473804
Alignment:
Q  10 aaaactttaaaataggtccca-ctaatcttacaatatacttcaattttatattttaaa 66  Q
    |||||||||||| |||||||| ||||||||||||||||| |||| |||||| ||||||    
T  7473747 aaaactttaaaacaggtcccatctaatcttacaatatacctcaaatttatactttaaa 7473804  T

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Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 14947829 - 14947999
Alignment:
Q  7 tccaaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaagagaatg 106  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  14947829 tccaaaactttaaaataggactcactaatcttacaatatacttcaattttgtattttaaactaataaaatattgataaaaggtgaaaaaggaagagaa-- 14947926  T
Q  107 gcaccgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattagcagtgtccaagcagtatccaaactgacaca 195  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  14947927 ----------------tggcaccgtagtaaacaattgccaccaccacaatatcaattagcagtgtctaagcaatgtccaaactgacaca 14947999  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 39060299 - 39060333
Alignment:
Q  10 aaaactttaaaataggtcccactaatcttacaata 44  Q
    ||||||||||||||||||||||| |||||||||||    
T  39060299 aaaactttaaaataggtcccacttatcttacaata 39060333  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 4925166 - 4925207
Alignment:
Q  7 tccaaaactttaaaataggtcccactaatcttacaatatact 48  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  4925166 tccaaaactctaaaataggtctcacttatcttacaatatact 4925207  T

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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 7167999 - 7167877
Alignment:
Q  3 actctccaaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaagag 102  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||| ||    
T  7167999 actctccaaaactctaaaataggtctcactaatcttacaatata-ttcaattttatattttaaacta--------ttgataaaaggtgaaaaaggaaaag 7167909  T
Q  103 aatggcaccgttgccattcttggcaccgtagt 134  Q
    ||||||||| ||||||||||||||||||||||    
T  7167908 aatggcaccattgccattcttggcaccgtagt 7167877  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 7167879 - 7167825
Alignment:
Q  167 agtgtccaagcagtatccaaactgacacacacaggcacacgttggcaataccact 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7167879 agtgtccaagcagtatccaaactgacacacacaggcacacgttggcaataccact 7167825  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 37457723 - 37457765
Alignment:
Q  7 tccaaaactttaaaataggtcccactaatcttacaatatactt 49  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  37457723 tccaaaactttaaaataggtcccacttatcttacaatatactt 37457765  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 19322820 - 19322777
Alignment:
Q  5 tctccaaaactttaaaataggtcccactaatcttacaatatact 48  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  19322820 tctccaaaactctaaaatagatcccacttatcttacaatatact 19322777  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 27641621 - 27641686
Alignment:
Q  10 aaaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaa 75  Q
    ||||||||||||| ||||  ||| || | |||||||||||||| ||||||||||| | ||||||||    
T  27641621 aaaactttaaaatgggtcttacttatttcacaatatacttcaaatttatattttacattaataaaa 27641686  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 51613354 - 51613394
Alignment:
Q  7 tccaaaactttaaaataggtcccactaatcttacaatatact 48  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  51613354 tccaaaactt-aaaatgggtcccactaatcttacaatatact 51613394  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 1035844 - 1035884
Alignment:
Q  7 tccaaaactttaaaataggtcccactaatcttacaatatac 47  Q
    ||||||||||||||||| ||| |||| ||||||||||||||    
T  1035844 tccaaaactttaaaatatgtctcacttatcttacaatatac 1035884  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 35158976 - 35159129
Alignment:
Q  11 aaactttaaaataggtcccactaatcttacaatatacttcaattttatattttaaactaataaaatattgataaaaggtgaaaaaggaagagaatggcac 110  Q
    ||||| |||||||||||||||||||| |||||||||| || |  || ||||||||| ||||||||||| |  |||||||| |||    ||||||||||||    
T  35158976 aaactctaaaataggtcccactaatcgtacaatatac-tctaacttgtattttaaattaataaaatatagtcaaaaggtggaaagttgagagaatggcac 35159074  T
Q  111 cgttgccattcttggcaccgtagtaaacaattgccaccaccacaatatcaattag 165  Q
    | |  ||||| ||||||| |||  || || || ||| |||| | |||||||||||    
T  35159075 catatccattattggcactgtaccaaccatttaccatcaccgctatatcaattag 35159129  T

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