View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_4 (Length: 544)
Name: NF5442_low_4
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 10311811 - 10311290
Alignment:
| Q |
1 |
aatagctaaatgatttctctgatgctgtctaaaattatgtgttgggatacctaaagccacattcaagttcttattattcctaacatgtaacttttcaaca |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10311811 |
aatagctaattgatttctctgatgctgtctaaaattatgtggagggatacctaaagccacattcaagttcttattattcctaacatgtaatttttcaaca |
10311712 |
T |
|
| Q |
101 |
atgtgtttaggatctgtggtggaacaaaaactagtactaggaggtccagatccagctaaggaagcaaaatttctagttaaaatattattctcattaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10311711 |
atgtgtttaggatctgtggtggaacaaaaactagtactaggaggtccagatccagctaaggaagcaaaatttctagttaaaatattattctcattaccaa |
10311612 |
T |
|
| Q |
201 |
tcacattttccttcctaatatttgtgcataatctaggtgaccttggtaaagggtcattgattttcctcttatgctcttcagttcctctcccactatttgc |
300 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10311611 |
tcacattttccttcctaataggtgtgcataatctaggtgaccttggtaaagggtcattgattttcctcttatgctcttcagttcctctcccactatttgc |
10311512 |
T |
|
| Q |
301 |
agtcatgtcttataagtaaccaattcatgcagttccttcaatcaaatttagatcaatatataagtttattttacaacatatattgtgaatatgactgaaa |
400 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10311511 |
agtcatgtcttataaataaccaattcatgcagttccttcaatcaaatttagatcaatatataagtttattttacaacatatattgtgaatatgactgaaa |
10311412 |
T |
|
| Q |
401 |
atcaacaaccaactnnnnnnnntatatatataccttcaaatgattgcatgaacatagatgtatagaatatattttctttataacaagaaaaagaacagac |
500 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10311411 |
atcaacaagcaactaaaaaaaatatatatataccttcaaatgattgcatgaacatagatgtatagaatatattttctttataacaagaaaaagaacagac |
10311312 |
T |
|
| Q |
501 |
atgttgaatagcatatgataaa |
522 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10311311 |
atgttgaatagcatatgataaa |
10311290 |
T |
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