View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_40 (Length: 237)
Name: NF5442_low_40
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_40 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 9170019 - 9170240
Alignment:
| Q |
16 |
catccaaggcaatcaatgattggtctttcaagctatcatatccatgatatccaaggttatagctatcaccagtttcattataaatactacaagatgcctc |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9170019 |
catccaaggcaatcaatgattgatctttcaagctatcatatccattatatccaaggttatagctatcaccagtttcattataaatactacaagatgcctc |
9170118 |
T |
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| Q |
116 |
atgaagtaagcgttgactctcctcaaaattttcctctgaatcattccaaggatgcttctccattaaccttataccatccaactccattgccacttccttc |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9170119 |
atgaagtaagcgttgactctcctcaaaattttgctctgtatcattccaaggatgcttctccattaaccttatgccatccaactccattgccacttccttc |
9170218 |
T |
|
| Q |
216 |
atacaaggtctttcatcccctc |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
9170219 |
atacaaggtctttcatcccctc |
9170240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 9218102 - 9218323
Alignment:
| Q |
16 |
catccaaggcaatcaatgattggtctttcaagctatcatatccatgatatccaaggttatagctatcaccagtttcattataaatactacaagatgcctc |
115 |
Q |
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|||||||| ||||||||| || ||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||| || ||||||||||||||||| |
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| T |
9218102 |
catccaagacaatcaatggctgatctttcaagctatcatacccattatatccagggttatagctatcatcagtttcattgtagatactacaagatgcctc |
9218201 |
T |
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| Q |
116 |
atgaagtaagcgttgactctcctcaaaattttcctctgaatcattccaaggatgcttctccattaaccttataccatccaactccattgccacttccttc |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| || |
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| T |
9218202 |
atgaagtaagcgttgactctcctcaaaattttgctctgtatcattccaaggatgcttctccattaaccttatgccatccaactccatagctacttccctc |
9218301 |
T |
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| Q |
216 |
atacaaggtctttcatcccctc |
237 |
Q |
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|||| |||||||||||| |||| |
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| T |
9218302 |
atactaggtctttcatcacctc |
9218323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 9161193 - 9161414
Alignment:
| Q |
16 |
catccaaggcaatcaatgattggtctttcaagctatcatatccatgatatccaaggttatagctatcaccagtttcattataaatactacaagatgcctc |
115 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||| ||| |||||| ||||||||||||||||| |||||||||| |
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| T |
9161193 |
catctaaggcaatcaatggttgatctttcaagctatcatacccactatatccaaggttaatgctttcaccaatttcattataaatactagaagatgcctc |
9161292 |
T |
|
| Q |
116 |
atgaagtaagcgttgactctcctcaaaattttcctctgaatcattccaaggatgcttctccattaaccttataccatccaactccattgccacttccttc |
215 |
Q |
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| ||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9161293 |
tttaagtaagtgttgtctctcctcaaaatttagctctgaatcattccaaggatggttctccattaaccttataccatccaactccattgccacttccttc |
9161392 |
T |
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| Q |
216 |
atacaaggtctttcatcccctc |
237 |
Q |
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|| | ||| ||||||||||||| |
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| T |
9161393 |
atgctaggcctttcatcccctc |
9161414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 9199587 - 9199807
Alignment:
| Q |
17 |
atccaaggcaatcaatgattggtctttcaagctatcatatccatgatatccaaggttatagctatcaccagtttcattataaatactacaagatgcctca |
116 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||| || |||||||||||||||||| |
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| T |
9199587 |
atccaagacaatcaatggttgatctttcaagctatcatacccactatatccagggttgtagctatcaccagtttcattgtagatactacaagatgcctca |
9199686 |
T |
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| Q |
117 |
tgaagtaagcgttgactctcctcaaaattttcctctgaatcattccaaggatgcttctccattaaccttataccatccaactccattgccacttccttca |
216 |
Q |
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||||||||| |||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |
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| T |
9199687 |
tgaagtaagtgttgactctcttcaaagttttgttctgtatcattccaaggatgcttctccattaaccttataccatccaactccatagctacttccctca |
9199786 |
T |
|
| Q |
217 |
tacaaggtctttcatcccctc |
237 |
Q |
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||| |||||||||||| |||| |
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| T |
9199787 |
tactaggtctttcatcacctc |
9199807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 9155281 - 9155494
Alignment:
| Q |
16 |
catccaaggcaatcaatgattggtctttcaagctatcatatccatgatatccaaggttatagctatcaccagtttcattataaatactacaagatgcctc |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||||| ||| ||||||||||| | |||||||||| ||||| ||||||||||| ||| ||||| |
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| T |
9155281 |
catccaagataatcaatgattgatctttcaagctgtcatacccactatatccaaggtcaatgctatcaccaatttcactataaatactagaagttgcctt |
9155380 |
T |
|
| Q |
116 |
atgaagtaagcgttgactctcctcaaaattttcctctgaatcattccaaggatgcttctccattaaccttataccatccaactccattgccacttccttc |
215 |
Q |
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| ||||||| |||| ||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
9155381 |
tttaagtaagtgttgtctctcctcaaattttaggtctgtatcattccaaggatgtttctccattaaccttataccatccaactccatagctatttccttc |
9155480 |
T |
|
| Q |
216 |
atacaaggtctttc |
229 |
Q |
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|||| ||||||||| |
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| T |
9155481 |
atactaggtctttc |
9155494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 9119210 - 9119046
Alignment:
| Q |
62 |
atatccaaggttatagctatcaccagtttcattataaatactacaagatgcctcatgaagtaagcgttgactctcctcaaaattttcctctgaatcattc |
161 |
Q |
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|
|||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| || ||| |||||||| ||||| ||||||| |
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| T |
9119210 |
atatccaaggttatagctatca---gtttcatcataaaagctagaagatgcctcatgaagtaagcgttggctttccccaaaatttagctctgtatcattc |
9119114 |
T |
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| Q |
162 |
caaggatgcttctccattaaccttataccatccaactccattgccacttccttcatacaaggtctttc |
229 |
Q |
| |
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|| |||||| ||||| ||||||||||||||||||||||||| || | ||||||||||| ||||||||| |
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| T |
9119113 |
catggatgcatctcctttaaccttataccatccaactccatagctatttccttcatactaggtctttc |
9119046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 9229131 - 9229200
Alignment:
| Q |
160 |
tccaaggatgcttctccattaaccttataccatccaactccattgccacttccttcatacaaggtctttc |
229 |
Q |
| |
|
||||||| ||||||||||||||||||| || || | |||||| |||||||| ||||| | ||||||||| |
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|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttc |
9229200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 1815523 - 1815591
Alignment:
| Q |
168 |
tgcttctccattaaccttataccatccaactccattgccacttccttcatacaaggtctttcatcccct |
236 |
Q |
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||||| ||||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||| |
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| T |
1815523 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctcccct |
1815591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 9146421 - 9146497
Alignment:
| Q |
16 |
catccaaggcaatcaatgattggtctttcaagctatcatatccatgatatccaaggttatagctatcaccagtttca |
92 |
Q |
| |
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|||||||||||||| ||| ||| || |||||||||||||| ||| ||||| ||||| | |||||||||| ||||| |
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| T |
9146421 |
catccaaggcaatcgatggttgatcgttcaagctatcatacccactatatctaaggtcaatgctatcaccaatttca |
9146497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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