View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_41 (Length: 235)
Name: NF5442_low_41
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_41 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7979217 - 7978983
Alignment:
| Q |
1 |
aacaaacaaattcatagacggataagataacaaataaattagatgcagtgttgttaattgcggactgtagaaaatagtggtttttcaacgtccactatgc |
100 |
Q |
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| T |
7979217 |
aacaaacaaattcatagacggataagataacaaataaattagatgcagtgttgttaattgcggactgtagaaaatagtggtttttcaacgtccactatgc |
7979118 |
T |
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| Q |
101 |
tacattgctatagcgctagtgaacggttcaaattctgctatgctatagcgcgctatttgtaattttgcattcaagaggaaatggattacctgctcaagta |
200 |
Q |
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| T |
7979117 |
tacattgctatagtgctagtgatcggttcaaattctgctatgctatagcgcgctatttgtaattttgcattcaagaggaaatggattacctgctcaagta |
7979018 |
T |
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| Q |
201 |
tgcaacctttgcgaagcgcaactaaacagtccagt |
235 |
Q |
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| T |
7979017 |
tgcaacctttgcgaagcgcaactaaacagtccagt |
7978983 |
T |
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