View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5442_low_7 (Length: 418)
Name: NF5442_low_7
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5442_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 82 - 409
Target Start/End: Complemental strand, 4064616 - 4064289
Alignment:
| Q |
82 |
tgtctcgagtgcctaaagcatcctcccctttataaccatgcctgaccgcccatcctccctcgccccacccacacacaaaaatcatcctcactttttatga |
181 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064616 |
tgtctcgagtgcctaaagtatcctccccttgataaccatgcctgaccgcccatcctccctcgccccacccacacacaaaaatcatcctcactttttatga |
4064517 |
T |
|
| Q |
182 |
ttcattttattctccgtgtgttagttttccagattgttgcctaatacattgaatgatatatactattatctgcaaaatgagtattactataatctgtgga |
281 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064516 |
ttcattttattctctgtgtgttagttttccagattgttgcctaatacattgaatgatatatactattatctgcaaaatgagtattactataatctgtggg |
4064417 |
T |
|
| Q |
282 |
agttttttgggtaatggtgatccacgaatatgaatatatctctgtaatgctgaagtacttaaatcaaatatattttggtttggaatccaaactttgattg |
381 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4064416 |
agtttgttgggtaatggtgatccatgaatatgaatatatctctgtaatgctgaagtacttaaatcaaatatatttttgtttggaatccaaactttgattg |
4064317 |
T |
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| Q |
382 |
ctacatgtatttctgctcccgccctttg |
409 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4064316 |
ctacatgtatttctgctcccgccctttg |
4064289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 4064726 - 4064658
Alignment:
| Q |
16 |
attttgtactcgaggcatactgaaagtataacagaactatacctagggttaccaacaagtatattttgt |
84 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064726 |
attttatactcgaggcatacttaaagtataacagaactatacctagggttaccaacaagtatattttgt |
4064658 |
T |
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