View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5442_low_8 (Length: 417)

Name: NF5442_low_8
Description: NF5442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5442_low_8
NF5442_low_8
[»] chr8 (8 HSPs)
chr8 (25-279)||(37919862-37920118)
chr8 (284-409)||(14678010-14678135)
chr8 (284-409)||(5657778-5657903)
chr8 (284-409)||(27541548-27541672)
chr8 (284-409)||(31100861-31100986)
chr8 (284-352)||(23738664-23738731)
chr8 (364-409)||(5662652-5662697)
chr8 (284-352)||(24788079-24788147)
[»] chr7 (5 HSPs)
chr7 (284-409)||(43071371-43071496)
chr7 (284-409)||(1262095-1262220)
chr7 (284-409)||(26909970-26910095)
chr7 (284-409)||(48849796-48849921)
chr7 (284-353)||(22007347-22007416)
[»] chr5 (7 HSPs)
chr5 (284-409)||(9043809-9043934)
chr5 (284-409)||(30442536-30442661)
chr5 (284-409)||(7473478-7473603)
chr5 (284-409)||(22009517-22009642)
chr5 (288-374)||(26840988-26841074)
chr5 (284-409)||(22004446-22004570)
chr5 (276-353)||(19085422-19085500)
[»] chr2 (6 HSPs)
chr2 (284-409)||(23348969-23349094)
chr2 (288-409)||(12741699-12741820)
chr2 (284-406)||(18355305-18355427)
chr2 (284-406)||(10328884-10329006)
chr2 (284-409)||(1615904-1616028)
chr2 (284-409)||(24454522-24454646)
[»] chr3 (11 HSPs)
chr3 (278-409)||(19882100-19882231)
chr3 (284-406)||(37982356-37982478)
chr3 (284-409)||(53973275-53973400)
chr3 (284-409)||(31685084-31685209)
chr3 (284-409)||(2549944-2550068)
chr3 (284-409)||(12538625-12538749)
chr3 (284-409)||(17681774-17681898)
chr3 (284-409)||(24761887-24762012)
chr3 (284-409)||(24815922-24816047)
chr3 (284-409)||(53352750-53352875)
chr3 (284-409)||(53027741-53027866)
[»] scaffold0596 (1 HSPs)
scaffold0596 (284-409)||(661-786)
[»] scaffold0096 (1 HSPs)
scaffold0096 (284-409)||(27417-27541)
[»] scaffold0035 (1 HSPs)
scaffold0035 (284-409)||(35070-35195)
[»] chr6 (7 HSPs)
chr6 (284-409)||(33045420-33045545)
chr6 (284-406)||(10092519-10092641)
chr6 (282-409)||(8976409-8976536)
chr6 (284-389)||(3065705-3065809)
chr6 (284-353)||(30908414-30908483)
chr6 (284-353)||(16246709-16246778)
chr6 (284-352)||(4660222-4660289)
[»] chr4 (2 HSPs)
chr4 (284-409)||(29863350-29863475)
chr4 (284-338)||(12506443-12506497)
[»] scaffold0045 (1 HSPs)
scaffold0045 (284-409)||(11623-11748)
[»] chr1 (1 HSPs)
chr1 (284-353)||(50990914-50990983)
[»] scaffold0157 (1 HSPs)
scaffold0157 (284-338)||(13980-14034)
[»] scaffold0475 (1 HSPs)
scaffold0475 (286-352)||(7520-7585)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 37919862 - 37920118
Alignment:
Q  25 gtttcaaggtgagagagtgagagacactgatactagttgaaattgctgacttg-ttataaacaaacaaacaaaggctgacttggataaacaaattggaca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||    
T  37919862 gtttcaaggtgagagagtgagagacactgatactagttgaaattgctgacttggttataaacaaacaaacaaaggctgagttggataaacaaattggcca 37919961  T
Q  124 attattgttttactatctctattaaatttagaaataattttatgtctcatgcaa-aaaactctgataattatatacaaaattaattcaagttcttctaat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  37919962 attattgttttactatctctattaaatttagaaataattttatgtctcaagcaagaaaactctcataattatatacaaaattaattcaagttcttctaat 37920061  T
Q  223 ttacatattttaaagatttcttttatcatcactgaattatttaccgtacccttacat 279  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37920062 ttacatattttaaagattttttttatcatcactgaattatttaccgtacccttacat 37920118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 14678135 - 14678010
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14678135 ttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 14678036  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  14678035 gctaagcatgcatctcatcctttgat 14678010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 5657778 - 5657903
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||||||||| |||| |||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5657778 ttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctcatcatttg 5657877  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    | ||||||||||||||||||||||||    
T  5657878 gttaagcatgcatctcatcctttgat 5657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 27541672 - 27541548
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  27541672 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaa-caagggacgccgttggatctcatcatttg 27541574  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  27541573 gctaagcatgcatctcatcctttgat 27541548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 31100986 - 31100861
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31100986 ttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcatcatttg 31100887  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    | |||||||| |||||||||||||||    
T  31100886 gttaagcatgtatctcatcctttgat 31100861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 23738664 - 23738731
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaa 352  Q
    |||||||||||||||||||||||||| |||||  ||||||||| ||| |||||| | ||||||||||||    
T  23738664 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 5662652 - 5662697
Alignment:
Q  364 ccgttggatctcatcatttggctaagcatgcatctcatcctttgat 409  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||    
T  5662652 ccgttagatctcatcatttggctaggcattcatctcatcctttgat 5662697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 24788147 - 24788079
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaa 352  Q
    ||||||||||||||  |||||||||| |||||  ||||||||| ||||||||| | |||||||| ||||    
T  24788147 ttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 43071496 - 43071371
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43071496 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 43071397  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  43071396 gctaagcatgcatctcatcctttgat 43071371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 1262095 - 1262220
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1262095 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctcatcatttg 1262194  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  1262195 gctaagcatgcatctcatcctttgat 1262220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 26910095 - 26909970
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| ||| |  ||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||    
T  26910095 ttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatcttatcatttg 26909996  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  26909995 gctaagcatgcatctcatcctttgat 26909970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 48849921 - 48849796
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||| ||| | ||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  48849921 ttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctcatcatttg 48849822  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  48849821 gctaagcatgcatctcatcctttgat 48849796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 22007347 - 22007416
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaa 353  Q
    ||||||||||| |||||||||||||| |||||  || |||||| |||| |||||||||||||||||||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa 22007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 9043809 - 9043934
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9043809 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 9043908  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  9043909 gctaagcatgcatctcatcctttgat 9043934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 30442661 - 30442536
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30442661 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 30442562  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  30442561 gctaagcatgcatctcatcctttgat 30442536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 7473603 - 7473478
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7473603 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcattta 7473504  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  7473503 gctaagcatgcatctcatcctttgat 7473478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 22009642 - 22009517
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22009642 ttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 22009543  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  22009542 gctaagcatgcatctcatcctttgat 22009517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 374
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
Q  288 atctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatct 374  Q
    |||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 26840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 22004570 - 22004446
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||||||| || |||| ||| || || |||||  | ||||||||||||||||||||    
T  22004570 ttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgcc-aatcaaggtggtccgttggatctcatcatttg 22004472  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||| ||||| ||| ||||||||||||    
T  22004471 gctcagcattcatatcatcctttgat 22004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 353
Target Start/End: Complemental strand, 19085500 - 19085422
Alignment:
Q  276 acatcata-ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaa 353  Q
    |||||||| |||||| ||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||    
T  19085500 acatcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 19085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 23349094 - 23348969
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23349094 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 23348995  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  23348994 gctaagcatgcatctcatcctttgat 23348969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 12741699 - 12741820
Alignment:
Q  288 atctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggcta 387  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggcta 12741798  T
Q  388 agcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||    
T  12741799 agcatgcatctcatcctttgat 12741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 18355427 - 18355305
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18355427 ttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctcatcatttg 18355328  T
Q  384 gctaagcatgcatctcatccttt 406  Q
    |||||||||||||||||||||||    
T  18355327 gctaagcatgcatctcatccttt 18355305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 10329006 - 10328884
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  10329006 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctcatcatttg 10328907  T
Q  384 gctaagcatgcatctcatccttt 406  Q
    |||||||||||||||||||||||    
T  10328906 gctaagcatgcatctcatccttt 10328884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 1616028 - 1615904
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||| |||||||||||||||||  |||||  ||| || | ||||| |||||||||||| |||||||| ||||||||  ||||||||| |||||||||    
T  1616028 ttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcgcatcatttg 1615930  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  1615929 gctaagcatgcatctcatcctttgat 1615904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 24454522 - 24454646
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||  |||||||||| ||    |||||||| | |||||||||||  ||| ||| ||||| |||||  ||||||||||||||||||||||    
T  24454522 ttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaa-caaggagggccgttggatctcatcatttg 24454620  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    |||   ||| ||||||||||||||||    
T  24454621 gcttgacattcatctcatcctttgat 24454646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 278 - 409
Target Start/End: Complemental strand, 19882231 - 19882100
Alignment:
Q  278 atcatattatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 377  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19882231 atcatattatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcat 19882132  T
Q  378 catttggctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||||||||    
T  19882131 catttggctaagcatgcatctcatcctttgat 19882100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 37982356 - 37982478
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37982356 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 37982455  T
Q  384 gctaagcatgcatctcatccttt 406  Q
    |||||||||||||||||||||||    
T  37982456 gctaagcatgcatctcatccttt 37982478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 53973400 - 53973275
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53973400 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcatcatttg 53973301  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||| ||||||||||||||||||    
T  53973300 gctaagcctgcatctcatcctttgat 53973275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 31685084 - 31685209
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||| |||||||||| |||||  ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  31685084 ttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctcatcatttg 31685183  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  31685184 gctaagcatgcatctcatcctttgat 31685209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 2549944 - 2550068
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||  |||||||||| |||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  2549944 ttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-atcatttg 2550042  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  2550043 gctaagcatgcatctcatcctttgat 2550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 12538749 - 12538625
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||||||||| || | |||||  ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12538749 ttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctcatcatttg 12538651  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    |||||||||||||| |||||||||||    
T  12538650 gctaagcatgcatcacatcctttgat 12538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 17681774 - 17681898
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||  |||||  ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  17681774 ttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaaggggggccgttggatctcatcatttg 17681872  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    | ||||||||||||||||||||||||    
T  17681873 gttaagcatgcatctcatcctttgat 17681898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 24762012 - 24761887
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||| || |||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||| |  | ||||||||||||||||||||    
T  24762012 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcatcatttg 24761913  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||| ||||||||||||||||||||||    
T  24761912 gctcagcatgcatctcatcctttgat 24761887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 24815922 - 24816047
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||| || |||||||||| |||||  ||||||||| |||||||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  24815922 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctcatcatttg 24816021  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||| ||||||||||||||||||||||    
T  24816022 gctcagcatgcatctcatcctttgat 24816047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 53352875 - 53352750
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||| || |||||||||| |||||  ||||||||  |||||||||| ||||||||||||||||| | |  | ||||||||||||||||||||    
T  53352875 ttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctcatcatttg 53352776  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||| ||  ||||||||||||||||||    
T  53352775 gctcagtgtgcatctcatcctttgat 53352750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 53027866 - 53027741
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||| || |||||| ||| ||| |  || |||||| |||||||||||||||||| ||||||||  | |  | ||||||||||||||||||||    
T  53027866 ttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctcatcatttg 53027767  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||| ||||||||||||||||||||||    
T  53027766 gctcagcatgcatctcatcctttgat 53027741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 661 - 786
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  661 ttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctcatcatttg 760  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  761 gctaagcatgcatctcatcctttgat 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 27417 - 27541
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27417 ttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctcatcatttg 27515  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  27516 gctaagcatgcatctcatcctttgat 27541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 284 - 409
Target Start/End: Original strand, 35070 - 35195
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  35070 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctcatcatttg 35169  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||||||||||||||||||||||||||    
T  35170 gctaagcatgcatctcatcctttgat 35195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 33045545 - 33045420
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg 33045446  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    | ||||||||||||||||||||||||    
T  33045445 gttaagcatgcatctcatcctttgat 33045420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 10092519 - 10092641
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||  |||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10092519 ttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 10092618  T
Q  384 gctaagcatgcatctcatccttt 406  Q
    |||||||||||||||||| ||||    
T  10092619 gctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 409
Target Start/End: Original strand, 8976409 - 8976536
Alignment:
Q  282 tattatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatt 381  Q
    |||||||||||||||||||||| ||||| |||||  || |||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||    
T  8976409 tattatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattatt 8976508  T
Q  382 tggctaagcatgcatctcatcctttgat 409  Q
    | ||||| ||||||||||||||||||||    
T  8976509 tagctaaacatgcatctcatcctttgat 8976536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 3065705 - 3065809
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||||||||||| || |||||  ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  3065705 ttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctcc-aaacaagggagaccgttggatctcatcatttg 3065803  T
Q  384 gctaag 389  Q
    ||||||    
T  3065804 gctaag 3065809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 30908483 - 30908414
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaa 353  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||| |||||||||||||||||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa 30908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 16246709 - 16246778
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaa 353  Q
    ||||||||||||||||| |||||||| |||||  ||||||||| ||| ||||||||||||||||||||||    
T  16246709 ttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa 16246778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 4660289 - 4660222
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaa 352  Q
    |||||| ||||||||||||||||||| |||||  ||||||||| ||| |||||| | ||||||||||||    
T  4660289 ttatatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

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Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 29863475 - 29863350
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29863475 ttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 29863376  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    ||| ||||||||||||||||||||||    
T  29863375 gctgagcatgcatctcatcctttgat 29863350  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 12506443 - 12506497
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaat 338  Q
    |||||||||||||||||||||||||| |||||  ||||||| | |||||||||||    
T  12506443 ttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

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Target: scaffold0045 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 11748 - 11623
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg 383  Q
    |||||||||||||||||||||||||| |||||  ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  11748 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctcatcatttg 11649  T
Q  384 gctaagcatgcatctcatcctttgat 409  Q
    | ||||||||||||||||||||||||    
T  11648 gttaagcatgcatctcatcctttgat 11623  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 50990914 - 50990983
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaaa 353  Q
    ||||||||||||||||||||||||||  || |  ||||||||| ||||||||||||||||||||||||||    
T  50990914 ttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa 50990983  T

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Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 14034 - 13980
Alignment:
Q  284 ttatatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaat 338  Q
    |||||||||||||||||||||||||| |||||  ||||||| | |||||||||||    
T  14034 ttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 7585 - 7520
Alignment:
Q  286 atatctaatctttgttaacattgccaatgaaattgcaaaccttaaacctaaatggttttggctccaa 352  Q
    |||| ||||||||||||||||||| |||||  ||||||||| ||| |||||| | ||||||||||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

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