View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5443-Insertion-1 (Length: 769)
Name: NF5443-Insertion-1
Description: NF5443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5443-Insertion-1 |
 | |
|
| [»] chr5 (19 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 769
Target Start/End: Complemental strand, 37704458 - 37703699
Alignment:
| Q |
9 |
ttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704458 |
ttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattct |
37704359 |
T |
|
| Q |
109 |
attgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704358 |
attgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttg |
37704259 |
T |
|
| Q |
209 |
ttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgtctatgtgttcgtctttttcttttaagacagaatcttggaaaaccg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704258 |
ttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaaccg |
37704159 |
T |
|
| Q |
309 |
gcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaattaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704158 |
gcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaattaca |
37704059 |
T |
|
| Q |
409 |
acctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattggtattggcgattta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704058 |
acctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattggtattggcgattta |
37703959 |
T |
|
| Q |
509 |
gtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaattaatatcacttgatcttagca |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37703958 |
gtgaatctcacacatctaaatttatcattttgtcacctcaagggtaatactccctccacaatctctcatttgtcaaaattaatatcacttgatcttagca |
37703859 |
T |
|
| Q |
609 |
gttatagttactcgaacatggaaattaatccgttgacatggaagaaacccattcgtaatgctactaatttaagggagcttcattttgaatagagtgaata |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
37703858 |
gttatagttactcgaacatggaaattaatccgttgacatggaagaaactcattcataatgctactaatttaagggagcttca-tttgaatagtgtggata |
37703760 |
T |
|
| Q |
709 |
tgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37703759 |
tgtcttccattacggagagctcattgtcaatgctaaagaatttgtcatcctctttggtttc |
37703699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 95 - 769
Target Start/End: Complemental strand, 37713328 - 37712655
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
37713328 |
tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatg |
37713229 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgt-ctatg--tgttcgtctttttcttttaagac |
291 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||| || || || || ||||| ||||||||||| ||||| |
|
|
| T |
37713228 |
acaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacccaa---tccgtactttggttgttcctctttttctttcaagac |
37713132 |
T |
|
| Q |
292 |
agaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaat |
391 |
Q |
| |
|
|||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37713131 |
agaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaat |
37713032 |
T |
|
| Q |
392 |
ctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgccta |
491 |
Q |
| |
|
|| |||||||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
37713031 |
ctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttttcttggtcttcaatgccta |
37712932 |
T |
|
| Q |
492 |
ttggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaattaat |
591 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
37712931 |
ttggtgttggagatttagtgaaactcacacatctaaatctatcaaattgttacctcaatggtaatattccttccacaatctctcatttgtcaaaattagt |
37712832 |
T |
|
| Q |
592 |
atcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaacccattcgtaatgctactaatttaagggagcttcat |
691 |
Q |
| |
|
|||||||||||||||||||| | | | | | || || | ||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| | |
|
|
| T |
37712831 |
atcacttgatcttagcagttttggggatgtggaattgaaactaaatccattgacatggaagaaactcattcataatgctactaatttaagggaacttta- |
37712733 |
T |
|
| Q |
692 |
tttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
|||| ||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37712732 |
tttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttc |
37712655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 95 - 769
Target Start/End: Complemental strand, 37641585 - 37640903
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || ||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
37641585 |
tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatg |
37641486 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggct---ttctgtctatgtgttcgtctttttcttttaagac |
291 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| |||||||||||||||||||||||||| | | || |||||| ||| | ||||||||||| ||||| |
|
|
| T |
37641485 |
acacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaaccggacgatattttgtctagttgtccctctttttctttcaagac |
37641386 |
T |
|
| Q |
292 |
agaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaat |
391 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37641385 |
agaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaat |
37641286 |
T |
|
| Q |
392 |
ctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgccta |
491 |
Q |
| |
|
|| |||||||||||||| || |||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
37641285 |
ctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaccaactcaacttggcttttaataatttttctttgtcttcaatgccta |
37641186 |
T |
|
| Q |
492 |
ttggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaattaat |
591 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||| ||||| ||| ||||||| |||||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
37641185 |
ttggtgttggagatttagtgaaactcacacatctaaatctatcaaaatgttacctcaatggtaatattccttccacaatctctcatttgtcaaaattagt |
37641086 |
T |
|
| Q |
592 |
atcacttgatcttagcagttatagttactcgaaca--------tggaaattaatccgttgacatggaagaaacccattcgtaatgctactaatttaaggg |
683 |
Q |
| |
|
||||||||||||||||||||| | | |||||| || || | ||| | || | |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
37641085 |
atcacttgatcttagcagttactggt--ccgaacaagtgggattgaaactcaattcattcatttggaagaaactcattcataatgctactaatttaaggg |
37640988 |
T |
|
| Q |
684 |
agcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37640987 |
agcttca-tttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaagaatttgtcatcctctttggtttc |
37640903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 95 - 769
Target Start/End: Complemental strand, 37534804 - 37534131
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
37534804 |
tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatg |
37534705 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgtctatgtgttcgtctttttcttttaagacaga |
294 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| |||||||||| |||||||||| ||| | ||| | |||| ||||||||||| |||||||| |
|
|
| T |
37534704 |
acaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaactctattttgcgc------gttcttctttttctttcaagacaga |
37534611 |
T |
|
| Q |
295 |
atcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctg |
394 |
Q |
| |
|
||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
37534610 |
atcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaacaatcta |
37534511 |
T |
|
| Q |
395 |
aaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattg |
494 |
Q |
| |
|
|||||||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
37534510 |
aaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttttcttggtcttcaatacctattg |
37534411 |
T |
|
| Q |
495 |
gtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaattaatatc |
594 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||||||| |||||| | | |||||| |||||| ||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
37534410 |
gtgttggagatttagtgaaactcacacatctaaatctatcatactctgacctcagtggtaatattccttccacaatctctcatttgtcaaaattagtatc |
37534311 |
T |
|
| Q |
595 |
acttgatcttagcagttatagttactc-gaa----catggaaa-ttaatccgttgacatggaagaaacccattcgtaatgctactaatttaagggagctt |
688 |
Q |
| |
|
|||||||||||||||||| | | | | ||| || |||| | ||| |||| | |||||||||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
37534310 |
acttgatcttagcagttactggtccgcagaagtgggattgaaactcaattcgttcatttggaagaaactcattcataatgctactaatttaagggaactt |
37534211 |
T |
|
| Q |
689 |
cattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
| |||| ||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37534210 |
ta-tttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttc |
37534131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 87 - 769
Target Start/End: Complemental strand, 37698505 - 37697818
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
37698505 |
aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaa |
37698406 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgtctatgtgttcgtctttttctttt |
286 |
Q |
| |
|
||| ||||| || || |||||||||||||||||| |||||||||| || |||||||| ||| |||| | || ||||| ||||| |||||||||| |
|
|
| T |
37698405 |
ccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtctagatgttcctctttttcttcc |
37698306 |
T |
|
| Q |
287 |
aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgca |
386 |
Q |
| |
|
| ||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||| | ||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
37698305 |
aggacagaatcttggaaaaacaatacagattgttgcaagtgggatggtgtcacgtgtgacactgagtcggattacgtgattggtttggacctcagttgca |
37698206 |
T |
|
| Q |
387 |
acaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaat |
486 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| |||| | ||||||||| |||||||||||| || |||||||||||| |||||||| | |||||||| |
|
|
| T |
37698205 |
acaatttgaaaggtgaattacatcccaatagcactatcttccagcttagacgccttcaacaacttaatttggcttttaataatttttcttggtcttcaat |
37698106 |
T |
|
| Q |
487 |
gcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaa |
586 |
Q |
| |
|
||||||||| | || ||||||||||| ||||||||||||||| ||||| |||| ||||||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
37698105 |
acctattggtgtcggagatttagtgaaactcacacatctaaatctatcaaattgttacctcaatggtaatattccttccacaatctctcatttgtcaaaa |
37698006 |
T |
|
| Q |
587 |
ttaatatcacttgatcttagcagttatagttactcgaaca--------tggaaattaatccgttgacatggaagaaacccattcgtaatgctactaattt |
678 |
Q |
| |
|
||| |||||||||||||||||||||| | || |||||| || || | ||| | || | |||||||||| ||||| ||||||||||||||| |
|
|
| T |
37698005 |
ttagtatcacttgatcttagcagttactggta--cgaacaagtgggattgaaactcaattcattcatttggaagaaactcattcataatgctactaattt |
37697908 |
T |
|
| Q |
679 |
aagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
|||||| |||||| || ||| ||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37697907 |
aagggatcttcatctt-aatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaagaatttgtcatcctctttggtttc |
37697818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 95 - 612
Target Start/End: Complemental strand, 37596037 - 37595517
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattg---ctgcttactcattttacttcctacactttctcattgtgcagccaac |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
37596037 |
tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaac |
37595938 |
T |
|
| Q |
192 |
atgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgt-ctatg--tgttcgtctttttcttttaa |
288 |
Q |
| |
|
|||| | ||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||| || || || || ||||| ||||||||||| || |
|
|
| T |
37595937 |
atgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacccaa---tccgtactttggttgttcctctttttctttcaa |
37595841 |
T |
|
| Q |
289 |
gacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaac |
388 |
Q |
| |
|
||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
37595840 |
gacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagttgcaac |
37595741 |
T |
|
| Q |
389 |
aatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgc |
488 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
37595740 |
aatcttaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaataatttttctgagtcttcaatgc |
37595641 |
T |
|
| Q |
489 |
ctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaatt |
588 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||||||| |||||| |||| |||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
37595640 |
ctattggtgttggagatttagtgaaactcacacatctaaatctatcatattgttacctcagtggtaatattccttccacaatctctcatttgtcaaaatt |
37595541 |
T |
|
| Q |
589 |
aatatcacttgatcttagcagtta |
612 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
37595540 |
agtatcacttgatcttagcagtta |
37595517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 87 - 769
Target Start/End: Original strand, 37391389 - 37392090
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
37391389 |
aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaa |
37391488 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggc---------tttctgtctatg-----tgtt |
272 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||| ||||| | |||| || || |||| |
|
|
| T |
37391489 |
ccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatcaaaacctatccttttttaatttcaaactttggttggtgtt |
37391588 |
T |
|
| Q |
273 |
cgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggttt |
372 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||| | | ||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
37391589 |
cctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattgaact |
37391688 |
T |
|
| Q |
373 |
ggatctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttt |
472 |
Q |
| |
|
|| ||||||||||||||| |||| ||||| ||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
37391689 |
agacctcagttgcaacaatttgaatggtgatttacatcccaatagcactatctttcagcttagacaccttcaacaactcaacttgtctttaaattttttt |
37391788 |
T |
|
| Q |
473 |
tctggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatct |
572 |
Q |
| |
|
| ||| |||||| ||| | |||||||||| |||||||||||||||||| |||||||| ||||| |||| |||||| |||||| |||||||||||||| |
|
|
| T |
37391789 |
tttgggtcttcattgcatgttggtattggtgatttagtgaatctcacatatctaaatctatcaaattgttacctcagtggtaatattccctccacaatct |
37391888 |
T |
|
| Q |
573 |
ctcatttgtcaaaattaatatcacttgatcttagcagttatagttac-tcgaaca-----tggaaattaatccgttgacatggaagaaacccattcgtaa |
666 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||| | || | ||||| | || || || | |||||||||||||||| ||||| ||| |
|
|
| T |
37391889 |
ctcatttgtcaaaattagtatcacttgatcttagcaattaccggcacttggaacaacaactcaaacttgatacattgacatggaagaaactcattcataa |
37391988 |
T |
|
| Q |
667 |
tgctactaatttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggt |
766 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| ||| || |||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
37391989 |
tgctactaatttaagggagcttca-tttgaatagagtggatatgtattccattagagagagctctttgtctatgctaaagaatgtgtcatcctctttggt |
37392087 |
T |
|
| Q |
767 |
ttc |
769 |
Q |
| |
|
||| |
|
|
| T |
37392088 |
ttc |
37392090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 87 - 769
Target Start/End: Complemental strand, 37437413 - 37436738
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||| | |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| |||| |
|
|
| T |
37437413 |
aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa |
37437314 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgt-ctatg--tgttcgtctttttct |
283 |
Q |
| |
|
||| ||||| | ||| ||||| |||||||||||| |||| ||| | |||||||||||||| ||||| || || || || |||| ||||||||| |
|
|
| T |
37437313 |
ccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaacccaa---tccgtactttggttgtttctctttttct |
37437217 |
T |
|
| Q |
284 |
tttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagtt |
383 |
Q |
| |
|
|| ||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||| |
|
|
| T |
37437216 |
ttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtctggacctcagtt |
37437117 |
T |
|
| Q |
384 |
gcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttc |
483 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37437116 |
gcaacaatctgaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatcatttttctgagtcttc |
37437017 |
T |
|
| Q |
484 |
aatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtca |
583 |
Q |
| |
|
||| |||||||||||| | ||||||||||| |||||||||||||| |||||| ||| |||||| |||||| ||| |||| |||||||||||||||| |
|
|
| T |
37437016 |
aatacctattggtattagtgatttagtgaaactcacacatctaaacctatcatactgtgacctcagtggtaatattccttccaaaatctctcatttgtca |
37436917 |
T |
|
| Q |
584 |
aaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaacccattcgtaatgctactaatttaaggg |
683 |
Q |
| |
|
|||||| |||| |||||||||| || |||| || | ||||| | ||||| || |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
37436916 |
aaattagtatcccttgatcttaacaattatgattctt------tggaactcaatccattcgcatggaagaaactcattcataatgctactaatttaaggg |
37436823 |
T |
|
| Q |
684 |
agcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| | || ||| |||||||||||| ||||||||||| |
|
|
| T |
37436822 |
agcttca-tctgaatggagtgaaaatgtcttcaattggagagagctctttgtcgttgttaacgaatttgtcatcttctttggtttc |
37436738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 118 - 769
Target Start/End: Original strand, 37380802 - 37381464
Alignment:
| Q |
118 |
ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattc |
217 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||| ||| |
|
|
| T |
37380802 |
ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttc |
37380901 |
T |
|
| Q |
218 |
aaacactcattttctgtcaacacttcatctaaacccggc------tttctgtctatgtgttcgtctttttcttttaagacagaatcttggaaaaccggca |
311 |
Q |
| |
|
||| ||||||||||| ||||||||||||| ||| ||| ||| | ||| ||||| |||||||||| |||| |||||||||||||| | |
|
|
| T |
37380902 |
aaaaactcattttctttcaacacttcatcgaaatccgatatacatttttggcctagatgttccactttttctttcaagatagaatcttggaaaaataata |
37381001 |
T |
|
| Q |
312 |
cagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaattacaacc |
411 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| || |||| ||||| ||||||||| |||| |||||||||| ||||||||| ||||||||||| || |
|
|
| T |
37381002 |
cagattgttgtgggtgggatggtgtcacgtgcgactccatgtcagatcatgtgattggtctggacctcagttgcagcaatctgaatggtgaattacatcc |
37381101 |
T |
|
| Q |
412 |
taatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattggtattggcgatttagtg |
511 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||| | || |||||| ||||||||| |
|
|
| T |
37381102 |
caatagcacaatcttccagcttagacaccttcaacaactcaacttggcttttaataatttttctgggtctttattgcatgttagtattgatgatttagtg |
37381201 |
T |
|
| Q |
512 |
aatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaattaatatcacttgatcttagcagtt |
611 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
37381202 |
aatctcacacatctaaatctatcacactgttccctcggtggtaatattccctccacaatctctcatttgtcaaaattagtatcacttgatctcagcagtt |
37381301 |
T |
|
| Q |
612 |
atagttactcgaacatgg------aaattaatccgttgacatggaagaaacccattcgtaatgctactaatttaagggagcttcattttgaatagagtga |
705 |
Q |
| |
|
|| | | | | | |||| || | ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| ||| | | | |||| |
|
|
| T |
37381302 |
attatgattggcatatgggattgaaactcaatccattgacatggaagaaactcattcataatgctactaatttaagggagctttctttag-gttgtgtga |
37381400 |
T |
|
| Q |
706 |
atatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
| ||||| || || |||| ||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
37381401 |
acatgtcctctattagagcgagctctttatctatgctaaagaatttgtcatcctctttggtttc |
37381464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 269 - 769
Target Start/End: Original strand, 37399451 - 37399941
Alignment:
| Q |
269 |
tgttcgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattg |
368 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
37399451 |
tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg |
37399550 |
T |
|
| Q |
369 |
gtttggatctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatca |
468 |
Q |
| |
|
|| |||| |||||||||||||| || |||||||||||||| || ||||||| |||| |||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
37399551 |
gtctggacctcagttgcaacaaactaaaaggtgaattacatcccaatagcatcatctttcagcttagacaccttcaacaacttaatttggcttttaataa |
37399650 |
T |
|
| Q |
469 |
tttttctggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccaca |
568 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| |||| ||||||| |||||| ||| |||||| |
|
|
| T |
37399651 |
tttttctgggtcttcaatgcctattggtgttggagatttagtgaaactcacacatctaaatacatcatattgtaacctcaatggtaatattccttccaca |
37399750 |
T |
|
| Q |
569 |
atctctcatttgtcaaaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaacccattcgtaatg |
668 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || | || |||||| || || | |||||||||||||||| ||||| ||||| |
|
|
| T |
37399751 |
atctctcatttgtcaaaattagtatcacttgatcttagc--tttaactttgtcgaac-------ttgattcattgacatggaagaaactcattcataatg |
37399841 |
T |
|
| Q |
669 |
ctactaatttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggttt |
768 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37399842 |
ctactaatttaagggagcttca-tttgaatattgtgaacatgtcttccctcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggttt |
37399940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 269 - 769
Target Start/End: Complemental strand, 37825425 - 37824926
Alignment:
| Q |
269 |
tgttcgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattg |
368 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
37825425 |
tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg |
37825326 |
T |
|
| Q |
369 |
gtttggatctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatca |
468 |
Q |
| |
|
|| |||| ||||||||||||||||| |||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
37825325 |
gtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctttcagcttaaacaccttcaacaactcaacttggcttttaatga |
37825226 |
T |
|
| Q |
469 |
tttttctggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccaca |
568 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| ||| ||||||| |||||| ||| |||||| |
|
|
| T |
37825225 |
tttttctttgtcttcaatgcctattggtgttggagatttagtgaaactcacacatctaaatctatcaaaatgttacctcaatggtaatattccttccaca |
37825126 |
T |
|
| Q |
569 |
atctctcatttgtcaaaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaacccattcgtaatg |
668 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| | | || | || || | ||| | || | |||||||||| ||||| ||||| |
|
|
| T |
37825125 |
atctctcatttgtcaaaattagtatcacttgatctcagcagaaactggcacgtgggattgaaactcaattcattcatttggaagaaactcattcataatg |
37825026 |
T |
|
| Q |
669 |
ctactaatttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggttt |
768 |
Q |
| |
|
|||||||||||||||| |||||| || ||| ||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37825025 |
ctactaatttaagggatcttcatctt-aatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaagaatttgtcatcctctttggttt |
37824927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 87 - 766
Target Start/End: Complemental strand, 37430469 - 37429779
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| ||||||||| | ||||||| |||||| || | ||||||||||||||||| ||||||| |||| |||||||||||| || || ||| |||||| |
|
|
| T |
37430469 |
aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaa |
37430370 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgtctatgtgttcgtctttttctttt |
286 |
Q |
| |
|
|| ||||| || || ||||||||||||||||| | ||||||| | |||||||||||||| |||| || ||| |||| ||||| ||||||||||| |
|
|
| T |
37430369 |
gcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctctttttctttc |
37430270 |
T |
|
| Q |
287 |
aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgca |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| | ||||||||| |||| || ||||||| |
|
|
| T |
37430269 |
aagacagaatcttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtctggaccttagttgca |
37430170 |
T |
|
| Q |
387 |
acaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaat |
486 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| |||| | |||| ||||||||||||||||||||||||||||||| |||||| || ||||| | |
|
|
| T |
37430169 |
acaatctgaacggtgaattagcggccaatagcaccatctttcaacttaaacaccttcaacaactcaacttggcttttaatgattttttcgggtcttcggt |
37430070 |
T |
|
| Q |
487 |
gcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaa |
586 |
Q |
| |
|
|| | ||||||||| ||| ||||||| ||||||||||||||| ||||| | | | |||||| | |||||||||||||||||||||||||| |
|
|
| T |
37430069 |
gcatgctggtattggtgatctagtgaagctcacacatctaaatctatcaaacaccggcattagtggtaatatttcctccacaatctctcatttgtcaaaa |
37429970 |
T |
|
| Q |
587 |
ttaatatcacttgatcttagcagttatagttactcgaacatg------------gaaattaatccgttgacatggaagaaacccattcgtaatgctacta |
674 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||| ||| || ||| | ||||||||||||| ||||| ||||||||||| |
|
|
| T |
37429969 |
ttagtatcacttgatcttagcagttatagttactggaacatggaacagaaactcgaacttggtccactcacatggaagaaactcattcttaatgctacta |
37429870 |
T |
|
| Q |
675 |
atttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggt |
766 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||| |||||||||||| ||||||| | |||||| |||||| || ||||||||||| |
|
|
| T |
37429869 |
atttaagggagcttca-tttgaatactgtggatatatctttaatcagagagagatctttgtcgctgctaaggaatttatcgtcctctttggt |
37429779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 87 - 766
Target Start/End: Original strand, 37411754 - 37412440
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| |||||| |||| |||||||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
37411754 |
aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaa |
37411853 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaa---cacttcatctaaacccggctttctgtctatgtgttcgtctttttct |
283 |
Q |
| |
|
| | ||||| |||| ||||||||||||||||| ||| | || |||||| || ||||||| | | | || | ||| ||||| ||||||||| |
|
|
| T |
37411854 |
ctatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaatggcatttcatctcagcatgatatttggcctagttgttcctctttttct |
37411953 |
T |
|
| Q |
284 |
tttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagtt |
383 |
Q |
| |
|
|| || ||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||| |||||||||||||| || || | |
|
|
| T |
37411954 |
ttgaaaacagattcttggaaaaataatacagattgttgcgagtggtatggtgtcatgtgcgacaccgttttggatcatgtgattggtttggaccttaggt |
37412053 |
T |
|
| Q |
384 |
gcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttc |
483 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||| |||| ||| |||| ||||||||||| ||||||| ||||||||||| |||||| | ||||| |
|
|
| T |
37412054 |
gcaacaatcttaaaggtgaattacatctcaatagcactatcttcaaacttaaacaccttcaacgactcaac-tggcttttaatgattttttcaggtcttc |
37412152 |
T |
|
| Q |
484 |
aatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtca |
583 |
Q |
| |
|
||| | || |||| | ||||| ||||||||||||||||| ||||||||| | ||| |||||| ||| |||||||||||||| |||||| |
|
|
| T |
37412153 |
ggtgcatgatgatattagtgatttggtgaatctcacacatcttaatttatcaaacactggaatcatttgtaatattccttccacaatctctcacttgtca |
37412252 |
T |
|
| Q |
584 |
aaattaatatcacttgatcttagcagttatagttac-tcgaaca-----tggaaattaatccgttgacatggaagaaacccattcgtaatgctactaatt |
677 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||| | || || | || || |||| || ||||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
37412253 |
aaattagtatcacttgatcttagcagtaactgatacatggatcaaaaactcaaacttgatcccttcacatggaaggaactcattcataatgttacaaatt |
37412352 |
T |
|
| Q |
678 |
taagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggt |
766 |
Q |
| |
|
|||| |||||||| | ||||||| || |||||||||| |||||||||| ||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
37412353 |
taagcgagcttca-tctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgctaaagaatttgtcatcctctctggt |
37412440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 37441650 - 37441491
Alignment:
| Q |
93 |
ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaaca |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| | | |||| |
|
|
| T |
37441650 |
ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaaca |
37441551 |
T |
|
| Q |
193 |
tgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccg |
254 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||| |||| |||||||||||||| ||||||| |
|
|
| T |
37441550 |
tgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatcgaaacccg |
37441491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 37825582 - 37825460
Alignment:
| Q |
130 |
cttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattt |
229 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||||||||||| |||| ||| |
|
|
| T |
37825582 |
cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt |
37825483 |
T |
|
| Q |
230 |
tctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37825482 |
tctgtcaacacttcatctaaacc |
37825460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 37437524 - 37437445
Alignment:
| Q |
9 |
ttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa |
88 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37437524 |
ttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa |
37437445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 647 - 769
Target Start/End: Complemental strand, 37595476 - 37595355
Alignment:
| Q |
647 |
tggaagaaacccattcgtaatgctactaatttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaag |
746 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||||| || | ||||||||||||| ||||||||| |
|
|
| T |
37595476 |
tggaagaaactcattcataatgctactaatttaagggagcttcattt-gaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaag |
37595378 |
T |
|
| Q |
747 |
aatttgtcatcctctttggtttc |
769 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
37595377 |
aatttttcatcctctttggtttc |
37595355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 37698640 - 37698571
Alignment:
| Q |
9 |
ttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta |
78 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37698640 |
ttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta |
37698571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 37399289 - 37399416
Alignment:
| Q |
125 |
tttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacact |
224 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||| |||||||||||| | |||| ||| ||||| | ||| |||||||||||||||||| | | |
|
|
| T |
37399289 |
tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaatt |
37399388 |
T |
|
| Q |
225 |
cattttctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |
|
|
| T |
37399389 |
cattttttgttgacacttcatcaaaacc |
37399416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 87 - 769
Target Start/End: Original strand, 16841327 - 16842005
Alignment:
| Q |
87 |
aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag |
186 |
Q |
| |
|
||||| |||||||||||||| | ||||||| |||| | ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| |||| |
|
|
| T |
16841327 |
aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa |
16841426 |
T |
|
| Q |
187 |
ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgtctatgtgttcgtctttttctttt |
286 |
Q |
| |
|
||||||||| ||||| || |||||||| |||||| |||||||||||||||||||||||||| ||| | ||| ||||| ||| |||||| |
|
|
| T |
16841427 |
ccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttga---------tatttgttcctctacttctttc |
16841517 |
T |
|
| Q |
287 |
aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgca |
386 |
Q |
| |
|
|||||| |||||||||||| ||| || ||||||||| ||||||||||||||||||| ||||| | || ||| ||||| |||||||||| |||||||||| |
|
|
| T |
16841518 |
aagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaatcagattacgtggttggtttggacctcagttgca |
16841617 |
T |
|
| Q |
387 |
acaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaat |
486 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| ||| | || | ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
16841618 |
acaatttgaaaggtgaattacatcccaatagcactatcctccagttaagacaccttcaacaactcaacttggcttttaataatttttctgggtcttcaat |
16841717 |
T |
|
| Q |
487 |
gcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaa |
586 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| ||||||| || | | || ||||||||||||||||||||||||| |
|
|
| T |
16841718 |
gcctattggtattagcgatttagtgaatatcacacatctaaatctatcatactgtgacctcaatggtgacattcactccacaatctctcatttgtcaaaa |
16841817 |
T |
|
| Q |
587 |
ttaatatcacttgatcttagcagttatagttactcgaacatgg------aaattaatccgttgacatggaagaaacccattcgtaatgctactaatttaa |
680 |
Q |
| |
|
||| |||| |||||||||||| |||| ||| || ||| || | ||| |||| || |||||||||| ||||| |||||||||||| |||| |
|
|
| T |
16841818 |
ttagtatctcttgatcttagcggttactcgtacgaaaaagtgggattgaaactcaattcgttcacttggaagaaactcattcataatgctactaaattaa |
16841917 |
T |
|
| Q |
681 |
gggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
|||| ||| | | | ||| ||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
16841918 |
gggatcttta-tctaaatggagtgaacatgtcttcaattggagagagctctttgtcaatgctaaacaatttgtcatcctctttggtttc |
16842005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 95 - 605
Target Start/End: Original strand, 24216193 - 24216703
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||||| ||||| |||| || |||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
24216193 |
tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatg |
24216292 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggctttctgtctatgtgttcgtctttttcttttaagacaga |
294 |
Q |
| |
|
| || || || |||||||||||||| |||||||| |||||||||||||||| |||||| || |||||||||||| |||||| ||| | ||| || |
|
|
| T |
24216293 |
acagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtgttccactttttatttcaggacgga |
24216392 |
T |
|
| Q |
295 |
atcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctg |
394 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||| |||| ||| ||||| ||| || ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
24216393 |
atcctggaaaaatggtgcagattgttgcgagtgggatggggtcatgtgtgacactaggtcaaattacgtgattggtctggaccttagttgcaacaatctg |
24216492 |
T |
|
| Q |
395 |
aaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttctggatcttcaatgcctattg |
494 |
Q |
| |
|
|||||||| ||||| || ||| |||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| | ||| |
|
|
| T |
24216493 |
aaaggtgagttacatccaaattgcactatcttcaagcttagacaccttcaacaactcaacttggcctttaataatttttcttggtcttcaatgcatgttg |
24216592 |
T |
|
| Q |
495 |
gtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctctcatttgtcaaaattaatatc |
594 |
Q |
| |
|
| ||||| ||| |||||||||||||| |||||||||||||| ||| |||| | |||||| |||||||||||||||||| ||||||||| || | || |
|
|
| T |
24216593 |
ggattggtgatctagtgaatctcacatatctaaatttatcaagctgttaccttactggtaatattccctccacaatctctcagttgtcaaaactagtgtc |
24216692 |
T |
|
| Q |
595 |
acttgatctta |
605 |
Q |
| |
|
||||||||||| |
|
|
| T |
24216693 |
acttgatctta |
24216703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 644 - 769
Target Start/End: Original strand, 24216751 - 24216869
Alignment:
| Q |
644 |
acatggaagaaacccattcgtaatgctactaatttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgcta |
743 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| | ||||| ||||| | || |||||||||||||||||||||| ||||| |
|
|
| T |
24216751 |
acatggaagaaactcattcataatgctactaatttaagggagcttta-cctgaatggagtggacatatcttcaatcagagagagctctt------tgcta |
24216843 |
T |
|
| Q |
744 |
aagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24216844 |
aagaatttgtcatcctctttggtttc |
24216869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
| Q |
22 |
cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
16841203 |
cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa |
16841272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 275 - 769
Target Start/End: Complemental strand, 14554556 - 14554069
Alignment:
| Q |
275 |
tctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttgg |
374 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | || | ||||||||||| | | |
|
|
| T |
14554556 |
tctttttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacaccatatcaggtcacgtgattgaactag |
14554457 |
T |
|
| Q |
375 |
atctcagttgcaacaatctgaaaggtgaattacaacctaatagcacaatctacaagcttagacaccttcaacaactcaacttggcttttaatcatttttc |
474 |
Q |
| |
|
| || |||||||||||| |||| ||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||| | ||||||||| || ||| |
|
|
| T |
14554456 |
accttagttgcaacaatttgaatggtgaattacatcctaatagcactatcttccagcttagacaccttcaacaactcaacctagcttttaatgatatttt |
14554357 |
T |
|
| Q |
475 |
tggatcttcaatgcctattggtattggcgatttagtgaatctcacacatctaaatttatcattttgtcacctcaagagtaatactccctccacaatctct |
574 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| |||| |||| | |||||| ||| |||||||||||| |
|
|
| T |
14554356 |
tgggtcttcaatgcctcttggtattggcgatttagtgaaactcatgcatctaaatatatccaattgttaccttagtggtaatattccttccacaatctct |
14554257 |
T |
|
| Q |
575 |
catttgtcaaaattaatatcacttgatcttagcagttatagttactcgaacatggaaattaatccgttgacatggaagaaacccattcgtaatgctacta |
674 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| ||| | | ||||||||||||| || |||||||| |||| ||||| ||||||||||| |
|
|
| T |
14554256 |
catttgtcaaaattagtatcacttgatcttagca-tta-----actggttcttggaaattaatccatttacatggaataaactcattcataatgctacta |
14554163 |
T |
|
| Q |
675 |
atttaagggagcttcattttgaatagagtgaatatgtcttcaatcagagagagctctttgttgatgctaaagaatttgtcatcctctttggtttc |
769 |
Q |
| |
|
|||||||||| ||| | | ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14554162 |
atttaagggatcttta-tctgaatggagtgaacatgtcttccatcagagagagctctttgtcaatgctaaagaatttgtcatcctctttggtttc |
14554069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 14554760 - 14554606
Alignment:
| Q |
95 |
tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
14554760 |
tccttttttattctattgccttattttacctttcactttttctt---attgttgcttactcattttacttcctatactttctcattgtgcaaccaacatg |
14554664 |
T |
|
| Q |
195 |
atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacc |
252 |
Q |
| |
|
| | ||| |||||||||||||||||| |||| ||||||||||||||||| || ||||| |
|
|
| T |
14554663 |
acacctctgccttgttacaattcaaaaactctttttctgtcaacacttcttcgaaacc |
14554606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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