View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5443_low_1 (Length: 388)
Name: NF5443_low_1
Description: NF5443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5443_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 27 - 379
Target Start/End: Original strand, 31780424 - 31780775
Alignment:
| Q |
27 |
catcatgcaagatcatttcaaacatatgagccttcatgccttagaatttagaaacgttatttctttttctgacattagcatacaagtcaaaaccatactg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31780424 |
catcatgcaagatcatttcaaacatatgagccttcatgccttagaatttagaaacgttatttctttttctgacattagcatataagtcaaaaccatactg |
31780523 |
T |
|
| Q |
127 |
atacttgctctacaaaacttgtacaataaggcacatggatcggtcagcatattctagactaatttcatgtggaagcctttggtcattatccccaaattca |
226 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31780524 |
atactggctctacaaaacttgtacaataaggcacatggatcggtcagcatattctagactaatttcatgtggaagcc-ttggtcattatccccaaattca |
31780622 |
T |
|
| Q |
227 |
gatacagctagcattgcttaacaaaatctgtggcatgnnnnnnntgtaaaagcaacatgtttaaagaaaggatgttacactattcacaactattggatca |
326 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31780623 |
gatacagctagcattgcttaccaaaatctgtggcatgaaaaaaatgtaaaagcaacatgtttaaagaaaggatgttacactattcacaactattggatca |
31780722 |
T |
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| Q |
327 |
gtcaaagggttaataaacttgtgtgccaagtttcgtcaggtttacggaagtat |
379 |
Q |
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| T |
31780723 |
ctcaaaggcttaataaacttgtgtgccaagtttcgtcaggtttacggaagtat |
31780775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 27 - 379
Target Start/End: Original strand, 2243677 - 2244027
Alignment:
| Q |
27 |
catcatgcaagatcatttcaaacatatgagccttcatgccttagaatttagaaacgttatttctttttctgacattagcatacaagtcaaaaccatactg |
126 |
Q |
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|||||||||| || ||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||| |||| ||||||||||||||||||||| |
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| T |
2243677 |
catcatgcaaaattatttcaaacatatgagccttcatgcattataatttagaagcgttatatctttttctgactttaggatacaagtcaaaaccatactg |
2243776 |
T |
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| Q |
127 |
atacttgctctacaaaacttgtacaataaggcacatggatcggtca------gcatattctagactaatttcatgtggaagcctttgg---tcattatcc |
217 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||| |
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| T |
2243777 |
atacttgctctgcaaaa-ttgtacaataaggcacatggatcggtcagcatatgcatattctagactaatttcatggggaagcttttggtcatcatcatcc |
2243875 |
T |
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| Q |
218 |
ccaaattcagatacagctagcattgcttaacaaaatctgtggcatgnnnnnnntgtaaaagcaacatgtttaaagaaaggatgttacactattcacaact |
317 |
Q |
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|||||||||||||||| | ||||||| |||||||||||||||| |||||| || | || | ||||||||||||| ||||||||||| |
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| T |
2243876 |
ccaaattcagatacagtt----ttgcttaccaaaatctgtggcatgaaaaaaatgtaaa------atttatagaaaaaggatgttacattattcacaact |
2243965 |
T |
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| Q |
318 |
attggatcagtcaaagggttaataaacttgtgtgccaagtttcgtcaggtttacggaagtat |
379 |
Q |
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||||||||||||||||| |||||||||||| | ||||||||| |||||| |||||| ||||| |
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| T |
2243966 |
attggatcagtcaaaggcttaataaacttgcgcgccaagttttgtcaggcttacgggagtat |
2244027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 54034137 - 54034260
Alignment:
| Q |
87 |
ttctttttctgacattagcatacaagtcaaaaccatactgat---acttgctctacaaaacttgtacaataaggcacatggatcggtcagcatattctag |
183 |
Q |
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||||||||||||| |||| | | ||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| | | ||||||| |
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| T |
54034137 |
ttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacccattctag |
54034236 |
T |
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| Q |
184 |
actaatttcatgtggaagcctttg |
207 |
Q |
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||||||| |||| ||||| ||||| |
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| T |
54034237 |
actaattacatgcggaaggctttg |
54034260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 29059365 - 29059261
Alignment:
| Q |
275 |
aaagcaacatgtttaaagaaaggatgttacactattcacaactattggatcagtcaaagggttaataaacttgtgtgccaagtttcgtcaggtttacgga |
374 |
Q |
| |
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||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| |||| | || |||||| | ||||||||| |||||||||| || |
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| T |
29059365 |
aaagcaacatgtttaaaaaaaggatgctacattattcacaataattggatcagtggaaggctaaagaaacttacgcgccaagttttgtcaggtttatggg |
29059266 |
T |
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| Q |
375 |
agtat |
379 |
Q |
| |
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||||| |
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| T |
29059265 |
agtat |
29059261 |
T |
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