View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5443_low_2 (Length: 331)

Name: NF5443_low_2
Description: NF5443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5443_low_2
NF5443_low_2
[»] chr8 (1 HSPs)
chr8 (1-289)||(42759811-42760099)
[»] chr5 (1 HSPs)
chr5 (1-291)||(1401747-1402037)
[»] chr2 (2 HSPs)
chr2 (177-288)||(25890428-25890538)
chr2 (177-255)||(4814639-4814717)
[»] chr4 (2 HSPs)
chr4 (177-255)||(37341958-37342036)
chr4 (163-288)||(56478858-56478983)
[»] chr7 (3 HSPs)
chr7 (177-255)||(23487027-23487105)
chr7 (177-255)||(23485516-23485594)
chr7 (163-207)||(11646513-11646557)
[»] chr6 (1 HSPs)
chr6 (163-242)||(445546-445625)
[»] chr3 (2 HSPs)
chr3 (177-251)||(50717264-50717338)
chr3 (177-251)||(50795510-50795584)
[»] chr1 (1 HSPs)
chr1 (163-288)||(23260957-23261082)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 42759811 - 42760099
Alignment:
Q  1 atgtgttggttttcaaaacgaaagttcaatagcccttaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42759811 atgtgttggttttcaaaacgaaagttcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaatacaaactaaatgaaa 42759910  T
Q  101 aactaaaggtttacataaaacacggtaaactaagcataccacaataattgcattattttgaattcaaacagccaaatactttggagccaaattattttag 200  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759911 aactaaaggtttacataaaacaaggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactttggagccaaattattttag 42760010  T
Q  201 ggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaaggaataaga 289  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42760011 ggctaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaaggaataaga 42760099  T

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Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 1402037 - 1401747
Alignment:
Q  1 atgtgttggttttcaaaacgaaagttcaatagcccttaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||    
T  1402037 atgtgttggttttcaaaacgaaagttcaatagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaactaaatggaa 1401938  T
Q  101 aactaaaggtttacataaaacacggtaaactaagcataccacaataattgcattattttgaattcaaacagccaaatactttggagccaaattattttag 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  1401937 aactaaaggtttacataaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagtcaaatactttggagccaaattattttaa 1401838  T
Q  201 ggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaaggaataagaga 291  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401837 ggttaactcattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaaggaataagaga 1401747  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 25890428 - 25890538
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataact 276  Q
    ||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||      
T  25890428 tactttgtagccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaagttgttgc-aacctaataaga 25890526  T
Q  277 ttaaggaataag 288  Q
    ||||||| ||||    
T  25890527 ttaaggagtaag 25890538  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 4814717 - 4814639
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 255  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4814717 tactttggagccaaatttttttagggttagcttattagcattaattgctgctaatttggctccaaatctttagggttaa 4814639  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 37341958 - 37342036
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 255  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  37341958 tactttgtagccaaattattttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaa 37342036  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 56478858 - 56478983
Alignment:
Q  163 ttcaaacagccaaatactttggagccaaattattttagggttaacaga-ttagcattaattgctgctaatttggctccaaatctttagggttaacttgat 261  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |  | |||||||| | |||||| | |||||  |||||| | ||||||||| ||| |    
T  56478858 ttcaaacagccaaatactttggagccaaattttttaagggttatctcacttagcatttagtgctgcaattttggagccaaatttctagggttaagttgtt 56478957  T
Q  262 gcaaacctaataactttaaggaataag 288  Q
    || ||||||||||  ||||||| ||||    
T  56478958 gc-aacctaataagattaaggagtaag 56478983  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 23487105 - 23487027
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 255  Q
    ||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  23487105 tactttgaagccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatttttagggttaa 23487027  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 23485594 - 23485516
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 255  Q
    ||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||||    
T  23485594 tactttgaagccaaatttttttagggttaacttattagcattaattgctgctaattcggctcgaaatttttagggttaa 23485516  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 11646513 - 11646557
Alignment:
Q  163 ttcaaacagccaaatactttggagccaaattattttagggttaac 207  Q
    |||||||| ||||||||||||  || |||||||||||||||||||    
T  11646513 ttcaaacaaccaaatactttgaggcgaaattattttagggttaac 11646557  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 445546 - 445625
Alignment:
Q  163 ttcaaacagccaaatactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaa 242  Q
    ||||||||||||||||||||||||||||| | | |||||||||||   || |||||||||||||||||||||||||||||    
T  445546 ttcaaacagccaaatactttggagccaaaatttcttagggttaactcgttggcattaattgctgctaatttggctccaaa 445625  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 50717338 - 50717264
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 251  Q
    ||||||| ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50717338 tactttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50717264  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 50795510 - 50795584
Alignment:
Q  177 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 251  Q
    ||||||| ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50795510 tactttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50795584  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 23261082 - 23260957
Alignment:
Q  163 ttcaaacagccaaatactttggagccaaattattttagggttaacaga-ttagcattaattgctgctaatttggctccaaatctttagggttaacttgat 261  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |  | |||||||| | |||||| | |||||  |||||| | ||||||||| ||| |    
T  23261082 ttcaaacagccaaatactttggagccaaattttttaagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgtt 23260983  T
Q  262 gcaaacctaataactttaaggaataag 288  Q
    || ||||||||||  ||||||| ||||    
T  23260982 gc-aacctaataagattaaggagtaag 23260957  T

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