View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5443_low_3 (Length: 293)
Name: NF5443_low_3
Description: NF5443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5443_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 21435587 - 21435313
Alignment:
| Q |
18 |
ataattgaagtacttagttgacgaaaccaatagaataatcaaaatctttcactcattaaactcttcatttgtatcgataataacagtggaccaaaaaaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21435587 |
ataattgaagtacttagttgacgaaaccaatagaatacgccaaatctttcactcattaaactcttcatgtgtatcgataataacagtggaccaaaaaaca |
21435488 |
T |
|
| Q |
118 |
atctaaaaagtaattgttttaatcgtatactagtataatcctaaactttagagaacaacaaaaaatacatatacactgtgcaaaaaatacaaacagggtt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21435487 |
atctaaaaagtaatcaatttaatcgtatactagtataatcctaaactttagagaacaacaaaaaatacctatacactgtgcaaaaaatacaaacagggtt |
21435388 |
T |
|
| Q |
218 |
gttatggattatcaccaccaccgttgcaaaagaactccaatattaaaacattcagaatacgtctcagccacctat |
292 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21435387 |
gttatggattatcaccaccactgttgcaaaagaactccaatattaaaacattcagaatacgtctcagccacctat |
21435313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 27154266 - 27154097
Alignment:
| Q |
18 |
ataattgaagtacttagttgacgaaaccaatagaataatcaaaatctttcactcattaaactcttcatttgtatcgataataacagtggaccaaaaaaca |
117 |
Q |
| |
|
|||||||||||| |||| ||| |||| ||||||||||| ||||||||| || || |||| ||| |||||| ||| ||||||||| |||| ||||||| | |
|
|
| T |
27154266 |
ataattgaagtaattaggtgaggaaagcaatagaataagcaaaatcttgcattccttaacctcatcatttctattgataataactttggatcaaaaaaga |
27154167 |
T |
|
| Q |
118 |
atctaaaaagtaattgttttaatcgtatactagtataat-----cctaaactttagagaacaacaaaaaatac |
185 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27154166 |
atctaaaaactca---atttaatcgtatactagtataatcctgacctaaactttagagaacaacaaaaaatac |
27154097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 27154056 - 27153974
Alignment:
| Q |
199 |
aaaaaatacaaacagggttgttatggattatcaccaccaccgttgcaaaagaactccaatattaaaacattcagaatacgtct |
281 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||| | || ||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
27154056 |
aaaatatacacacaggtttgttatggattatcaccgcaactgttgcaaaagaacaccaatattcaaacattcagaatacgtct |
27153974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 27031204 - 27031141
Alignment:
| Q |
198 |
caaaaaatacaaacagggttgttatggattatcaccaccaccgttgcaaaagaactccaatatt |
261 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | | || | ||||||||||||||| |
|
|
| T |
27031204 |
caaaaaatacaaacaggattgttatggattatcaccacctctgatgtacaagaactccaatatt |
27031141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 26956799 - 26956862
Alignment:
| Q |
51 |
aataatcaaaatctttcactcattaaactcttcatttgtatcgataataacagtggaccaaaaa |
114 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| ||| |||| |||| | ||||||||| |
|
|
| T |
26956799 |
aataaacaaaatctttcattcattaaactcttcatttacatctataacaacaattgaccaaaaa |
26956862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University