View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5444-Insertion-10 (Length: 213)

Name: NF5444-Insertion-10
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5444-Insertion-10
NF5444-Insertion-10
[»] chr4 (4 HSPs)
chr4 (12-213)||(29676418-29676619)
chr4 (38-154)||(35968306-35968422)
chr4 (16-144)||(38863107-38863235)
chr4 (15-149)||(36636898-36637032)
[»] chr8 (1 HSPs)
chr8 (46-182)||(35335816-35335952)
[»] chr5 (2 HSPs)
chr5 (12-154)||(19658291-19658433)
chr5 (13-154)||(19675131-19675272)
[»] chr6 (1 HSPs)
chr6 (68-144)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (86-139)||(43864074-43864127)
chr2 (86-139)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (92-124)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (94-154)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 29676619 - 29676418
Alignment:
Q  12 ggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttga 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676619 ggaaaattgtttaagagtggcaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttga 29676520  T
Q  112 acgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaaggcaatccgataagttgcttagcctgtcttcaccttctttgttttcttcctcacagt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29676519 acgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaaggcaatccgataagtcgcttagcctgtcttcaccttctttgttttcttcctcacagt 29676420  T
Q  212 gc 213  Q
    ||    
T  29676419 gc 29676418  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 35968422 - 35968306
Alignment:
Q  38 ttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacga 137  Q
    ||||||| | ||| ||||||||||  ||| ||||||||||||||||  |||| |||||||||| ||||||||||||||| ||||| | || ||| || ||    
T  35968422 ttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatga 35968323  T
Q  138 caaaatgcgaagtagaa 154  Q
    ||||||| |||| ||||    
T  35968322 caaaatgtgaaggagaa 35968306  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 38863107 - 38863235
Alignment:
Q  16 aattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacga 115  Q
    |||||||||| ||||| |||| ||||||  ||||| ||||||| ||| ||| ||||| |||||||||   |||||||||||||||  |||||| ||| |     
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatgg 38863206  T
Q  116 cgtgtttggcattcaaaaacgacaaaatg 144  Q
    | ||||||| ||||||  | |||||||||    
T  38863207 catgtttggtattcaacgatgacaaaatg 38863235  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 36636898 - 36637032
Alignment:
Q  15 aaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacg 114  Q
    |||||| |||| ||||| |||| |||| || | ||| ||||||||||| ||| ||||||||||||||    ||||||| |||||||  ||||||   ||     
T  36636898 aaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgaca 36636997  T
Q  115 acgtgtttggcattcaaaaacgacaaaatgcgaag 149  Q
    || ||||||| ||||||||| ||||||||| ||||    
T  36636998 acatgtttggtattcaaaaatgacaaaatgtgaag 36637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 35335952 - 35335816
Alignment:
Q  46 tgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgc 145  Q
    ||||| ||||| ||||| ||| ||||||| |||||||   |||| |||||||||| |||||||||||| || ||||||| ||  || || |||||||||     
T  35335952 tgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T
Q  146 gaagtagaaggcaatccgataagttgcttagcctgtc 182  Q
    ||||||||| |||||| | |||||  |||| ||||||    
T  35335852 gaagtagaatgcaatcaggtaagtcacttatcctgtc 35335816  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 19658291 - 19658433
Alignment:
Q  12 ggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttga 111  Q
    ||||||||| || ||||||| |||| | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||    
T  19658291 ggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttga 19658390  T
Q  112 acgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 154  Q
    ||| | | ||| || | |||||| ||||||||| |||| ||||    
T  19658391 acggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 19675131 - 19675272
Alignment:
Q  13 gaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaa 112  Q
    |||||||| || ||||||| |||| | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  ||||||||||    
T  19675131 gaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaa 19675230  T
Q  113 cgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 154  Q
    || | | ||| || | |||||| ||||||||| |||| ||||    
T  19675231 cggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 33844287 - 33844363
Alignment:
Q  68 gtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatg 144  Q
    |||||||||||||||   ||||  ||||||||||||||||||||||| ||| || ||  |||||||| |||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatg 33844363  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 43864074 - 43864127
Alignment:
Q  86 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 139  Q
    |||| |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  43864074 atcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggaca 43864127  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 43875241 - 43875294
Alignment:
Q  86 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 139  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| ||||| ||||    
T  43875241 atcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggaca 43875294  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 32413681 - 32413649
Alignment:
Q  92 tggacaaaatgcaagtttgaacgacgtgtttgg 124  Q
    ||||||||||||||||||||||| |||||||||    
T  32413681 tggacaaaatgcaagtttgaacggcgtgtttgg 32413649  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 25596957 - 25596897
Alignment:
Q  94 gacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 154  Q
    ||||||||||||||||||||| | |  |||| ||||||||| ||||||||| |||| ||||    
T  25596957 gacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

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