View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444-Insertion-2 (Length: 680)
Name: NF5444-Insertion-2
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 12 - 633
Target Start/End: Complemental strand, 38013354 - 38012748
Alignment:
| Q |
12 |
gataacgcaggcttataagcttagaggtgaattttcacgtctcaattttcttcacatgcgcttccatggaagctacaatccgcttccttcctcggttgat |
111 |
Q |
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| T |
38013354 |
gataacgcag-cttataagcttagaggtgaattttcacgtctcaattttcctcacatgcgcttccatggaagctacaatccgcttccttcctcggttgat |
38013256 |
T |
|
| Q |
112 |
tcaaaacttcaagctatttgcgaaactttagctatttctcaaaaacaggggaacacagaaaagccatgttcctctgttgaagatgtaaagcctctggtac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38013255 |
tcaaaacttcaagctatttgcgaaactttagctatttctcaaaaacaggggaacacagaaaagccatgttcctctgttgaagatgtaaagcctctggtac |
38013156 |
T |
|
| Q |
212 |
atgttcctgcacaatcgatgggtgaattcgtgtttgaggattttaaggttgagaagacagcgttttcgtctatgtctgatgaatgttcgcttggattgtc |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38013155 |
atgttcctgcacaatcaatgggtgaattcgtgtttgaggattttaagg------------cgttttcgtctatgtctgatgaatgttcgcttggattgtc |
38013068 |
T |
|
| Q |
312 |
ttcaccagaatcaggtgttactttcttggatttctcagattctagccagtgggatgaagtcgagaattttgggttgaagaagttcccttctgttgaaatt |
411 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38013067 |
ttcaccagaatcaggtcttactttcttggatttctcagattctagccagtgggatgaagtcgagaattttgggttgaagaagttcccttctgttgaaatt |
38012968 |
T |
|
| Q |
412 |
gattgggaagccttatgagtctttcttttttgggtttagtatatgtttatgtattttgtaatttcagggtatgtgttattgtgtcttcggcagcagcatc |
511 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
38012967 |
gattgggaagccttatgagtctttct-ttttgggtttagtatatgtttatgtattttgtaatttcagggtatatgttattgtgtcttcggcagcatcatc |
38012869 |
T |
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| Q |
512 |
tgcaatgaagtttttgacatttgctgagggagcttgaaaattttagggtactaaattagagagtcgtgttaattagtggttattattatggtctaatgat |
611 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38012868 |
tgcaatgaagtttttcacatttgctgagggagcttgaaaattttagggtactaaattagagagtcgtgttaattagtggttattattatggtctaatgat |
38012769 |
T |
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| Q |
612 |
gacccttcttggtctgctggtg |
633 |
Q |
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|| ||||||||||||||||||| |
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| T |
38012768 |
ga-ccttcttggtctgctggtg |
38012748 |
T |
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