View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5444-Insertion-3 (Length: 635)

Name: NF5444-Insertion-3
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5444-Insertion-3
NF5444-Insertion-3
[»] chr1 (4 HSPs)
chr1 (8-633)||(50663303-50663958)
chr1 (499-572)||(50653831-50653901)
chr1 (419-470)||(50654001-50654052)
chr1 (128-165)||(29095613-29095650)
[»] chr7 (2 HSPs)
chr7 (128-165)||(23992041-23992078)
chr7 (128-165)||(42195448-42195485)
[»] chr4 (2 HSPs)
chr4 (128-165)||(23348207-23348244)
chr4 (128-165)||(26179301-26179338)
[»] chr3 (3 HSPs)
chr3 (128-165)||(521855-521892)
chr3 (128-165)||(1561346-1561383)
chr3 (128-165)||(38176480-38176517)
[»] chr2 (1 HSPs)
chr2 (128-165)||(41464990-41465027)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 633
Target Start/End: Complemental strand, 50663958 - 50663303
Alignment:
Q  8 aatagatcactgacttagtttatgttttcaattgtctcactttgatccacactctattgggtgttttacatctctattaattttttattcaatgaaatca 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  50663958 aatagatcactgacttagtttatgttttcaattgtttcactttgatccacactctattga-tgttttacatctctattaattttttattcaatgaaatca 50663860  T
Q  108 tcaatcaaatagaatcaagaatttttcagccacacctccttgaattgcggtaaatagt----------------ctctttattcttgtaaaattcttgat 191  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||| |                |||||||||||||||||||| |||||    
T  50663859 tcaatcatatagaatcaagaatttttcagtcacacgtccttgaattgtggtaaataatgcattatcattcactgctctttattcttgtaaaatttttgat 50663760  T
Q  192 gttannnnnnnnnnnagagatatagcattactcttcataaagtcaactgtgaacagtcactagttttttagcacagtatatacatcaaaggaatttttt- 290  Q
    ||||           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  50663759 gttatttttttt---agagatatagcattgctcttcataaagtcaactgtgaacagtcactagttttttagcacagtatatacatgaaaggaattttttg 50663663  T
Q  291 cacctaaat-------------tatacttcaaagatttgcagtagagagtga--ttattatatctatgttatccgaaattggataatagggaaaaataaa 375  Q
    |||||||||             ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||    
T  50663662 cacctaaatacccttgttatattatacttcaaagatttgcagtagagagtgagattattatatctatgttatccgaaagtggataatagggaaaaacaaa 50663563  T
Q  376 aggagttgcttgaacatttgaaaaatctatgatctccctaaacaaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttgattgca 475  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50663562 aggagttgcttgaacatttgaaaaatctatgatctccctgaacaaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttgattgca 50663463  T
Q  476 caaaagttaatgttcatccttattatgtcattgttctagtatacagtgtatgtttgaaataagtaatgtcattatgatgattggccaattttaagtcat- 574  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  50663462 caaaagttaatgtttatccttattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgattggccaattttaagtcatt 50663363  T
Q  575 -tgtataaccttgattctttaaacttcctttgatttacatagttgttttcttcccctctt 633  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50663362 gtgtataaccttgattctttaaacttcctttgatttacatagttgttttcttcccttctt 50663303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 572
Target Start/End: Complemental strand, 50653901 - 50653831
Alignment:
Q  499 tatgtcattgttctagtatacagtgtatgtttgaaataagtaatgtcattatgatgattggccaattttaagtc 572  Q
    |||||||||||||||||||||| ||| |||||||||||   ||| ||||||||||||| ||||| |||||||||    
T  50653901 tatgtcattgttctagtatacattgtgtgtttgaaata---aatatcattatgatgatgggccacttttaagtc 50653831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 470
Target Start/End: Complemental strand, 50654052 - 50654001
Alignment:
Q  419 aaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttga 470  Q
    |||||||  ||||||||||||||||||| ||||||||||| ||| |||||||    
T  50654052 aaacactttaaggtggtaggttgagaaagttttacaattccgtagaagttga 50654001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 29095613 - 29095650
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||| || |||||||    
T  29095613 atttttcagccacacctccttgaattgtggcaaatagt 29095650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 23992041 - 23992078
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||| || |||||||    
T  23992041 atttttcagccacacctccttgaattgtggcaaatagt 23992078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 42195485 - 42195448
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  42195485 atttttcagacacacctccttgaattgtggtaaatagt 42195448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 23348207 - 23348244
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  23348207 atttttcagccacacctccttgaattatggtaaatagt 23348244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 26179301 - 26179338
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  26179301 atttttcagccacacctccttgaattgtgttaaatagt 26179338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 521855 - 521892
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||| || |||||||    
T  521855 atttttcagccacacctccttgaattgtggcaaatagt 521892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 1561346 - 1561383
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||| || |||||||    
T  1561346 atttttcagccacacctccttgaattgtggcaaatagt 1561383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 38176480 - 38176517
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    ||||||||||||||||||||||||||| || |||||||    
T  38176480 atttttcagccacacctccttgaattgaggcaaatagt 38176517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 41464990 - 41465027
Alignment:
Q  128 atttttcagccacacctccttgaattgcggtaaatagt 165  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  41464990 atttttcaaccacacctccttgaattgcggcaaatagt 41465027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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