View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5444-Insertion-7 (Length: 318)

Name: NF5444-Insertion-7
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5444-Insertion-7
NF5444-Insertion-7
[»] chr5 (24 HSPs)
chr5 (8-218)||(29870834-29871043)
chr5 (8-207)||(30339771-30339969)
chr5 (8-217)||(30434471-30434679)
chr5 (8-212)||(30748297-30748500)
chr5 (8-207)||(29851958-29852156)
chr5 (14-217)||(30398663-30398865)
chr5 (39-218)||(30481980-30482159)
chr5 (8-218)||(30058936-30059145)
chr5 (217-318)||(30748131-30748232)
chr5 (8-207)||(30243618-30243816)
chr5 (217-318)||(30340053-30340155)
chr5 (8-173)||(4380357-4380521)
chr5 (8-218)||(30678486-30678688)
chr5 (63-217)||(17419191-17419345)
chr5 (80-204)||(30202743-30202867)
chr5 (8-112)||(30482158-30482261)
chr5 (226-281)||(30058563-30058618)
chr5 (19-205)||(30205102-30205288)
chr5 (142-207)||(29710349-29710414)
chr5 (268-317)||(29851769-29851818)
chr5 (101-207)||(30473965-30474071)
chr5 (66-195)||(30429542-30429671)
chr5 (138-206)||(17981534-17981602)
chr5 (218-250)||(30481888-30481920)
[»] chr7 (1 HSPs)
chr7 (25-215)||(26705914-26706104)
[»] chr4 (4 HSPs)
chr4 (48-207)||(20298032-20298191)
chr4 (8-111)||(20297921-20298023)
chr4 (8-207)||(20303875-20304072)
chr4 (157-207)||(13615451-13615501)
[»] chr1 (1 HSPs)
chr1 (80-207)||(7098005-7098132)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 29871043 - 29870834
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  29871043 ttaccagagcaaaattggg-aaggtcttcaatcccttcgaattttaaggatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctc 29870945  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29870944 acttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 29870845  T
Q  208 caataaagttt 218  Q
     |||| |||||    
T  29870844 taatacagttt 29870834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 30339771 - 30339969
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||  |  ||||||||||||||||||||||||||||||||  ||||||||    
T  30339771 ttaccagagcaaaattggg-aaggtcttcaatcccttcgaactctacagatttatagctgtgaaggattgcgatgcttgccggagggtattcgacacctc 30339869  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    ||||| |||||||||||||| ||      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339870 acttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 30339969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 30434679 - 30434471
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    |||||||||||||| |||| |||||| ||||||||||||| |||||  |||||||  ||||  |||||||||||||||||||||||||||  ||||||||    
T  30434679 ttaccagagcaaaactggg-aaggtcttcaatcccttcgagctctactgatttggggttgtagaggattgcgatgcttgccggagggtattcgacacctc 30434581  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    ||||| |||||||||||| | ||    | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434580 acttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 30434481  T
Q  208 caataaagtt 217  Q
     |||| ||||    
T  30434480 gaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 30748500 - 30748297
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    |||||||||||||| |||| |||||| ||||||||||||| ||||| ||||||||  ||||  |||||||||||||||||||||||||||  ||||||||    
T  30748500 ttaccagagcaaaactggg-aaggtcttcaatcccttcgagctctacagatttggggttgtagaggattgcgatgcttgccggagggtattcgacacctc 30748402  T
Q  108 acttcacttgagcttc-tgaca--attgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattc 204  Q
    ||||| |||||||||| ||| |  |||||   ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30748401 acttctcttgagcttcttgatatcattga---ttgcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattc 30748305  T
Q  205 caacaata 212  Q
    ||| ||||    
T  30748304 caaaaata 30748297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 29852156 - 29851958
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||  ||||    ||||| |||||||| |||||||||||||||||||  ||||||||    
T  29852156 ttaccagagcaaaattggg-aaggtcttcaatcccttcgaactctacggattatatattgtaaaggattgagatgcttgccggagggtattggacacctc 29852058  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    ||||| |||||||||||| ||||| |   ||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||| ||||||||||||    
T  29852057 acttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaaagtgggaacatgtgaggattgggacaagatatctcatattccaa 29851958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 30398865 - 30398663
Alignment:
Q  14 gagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttca 113  Q
    ||||||||||||| ||||||  |||||||||| |  |||| | ||||  |||||| ||| |||||||||||| ||||||||||| ||||||||||||||     
T  30398865 gagcaaaattggg-aaggtctgcaatcccttcaatatctatatatttctaattgtaaagaattgcgatgctttccggagggtattagacacctcacttct 30398767  T
Q  114 cttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataa 213  Q
    |||||| ||||||||||  | | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  30398766 cttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaatac 30398667  T
Q  214 agtt 217  Q
    ||||    
T  30398666 agtt 30398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 30482159 - 30481980
Alignment:
Q  39 tcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggtt 138  Q
    |||||||||| |||| ||||||  |  ||| ||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||  ||  |    
T  30482159 tcccttcgaaatctacagatttatagctgtaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaat 30482060  T
Q  139 gcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaagttt 218  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  30482059 gcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattccaaaaatacagttt 30481980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 30059145 - 30058936
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| | ||||  |  ||||||||||||||||| ||||||||||||||  ||||||||    
T  30059145 ttaccagagcaaaattggg-aaggtcttcaatcccttcgaactctacatatttatagctgtgaaggattgcgatgtttgccggagggtattcgacacctc 30059047  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    ||||| |||||||||||||| ||    ||||||| ||||||| ||||| |||||||  || |||||||||||||||||||||||||| ||||||||||||    
T  30059046 acttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaagaagcgaacaggggaggattgggacaagatatctcatattccaa 30058947  T
Q  208 caataaagttt 218  Q
     |||| |||||    
T  30058946 aaatacagttt 30058936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 30748232 - 30748131
Alignment:
Q  217 ttcaattttactggtaagatctctatttccccttatttgcctcaattcactttatttttattcaaaaatatttttatatattctcaatcttgacttcttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748232 ttcaattttactggtaagatctctatttccccttatttgcctcaattcactttatttttattcaaaaatatttttatatattctcaatcttgacttcttt 30748133  T
Q  317 gg 318  Q
    ||    
T  30748132 gg 30748131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 30243618 - 30243816
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    |||||||||  |||||||| |||||| |||||||||||||  ||||||||||   |  ||||||||||||||||||||||||||||||||  ||||||||    
T  30243618 ttaccagagacaaattggg-aaggtcttcaatcccttcgatttctaaagattcatagatgtgaaggattgcgatgcttgccggagggtattcgacacctc 30243716  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    ||||| |||||| || |||  ||| |    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243717 acttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 30243816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 30340053 - 30340155
Alignment:
Q  217 ttcaattttactggtaagatctctatttccccttatttgcctcaattcactttatttttattcaaaaatatttttatata-ttctcaatcttgacttctt 315  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  30340053 ttcaattttactggtaagatctctatttccccttatctgcctcaattcactttatttttattcaaaagtatttttatatatttctcaatcttgacttctt 30340152  T
Q  316 tgg 318  Q
    |||    
T  30340153 tgg 30340155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 4380521 - 4380357
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||| | |||||| |||||||||| | ||||||| ||||||| ||||  ||||||||||||||||||||||||||||  ||||||||    
T  4380521 ttaccagagcaaaattgag-aaggtcttcaatcccttaggactctaacgatttgggattgcaaaggattgcgatgcttgccggagggtattcgacacctc 4380423  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaaca 173  Q
    ||||| |||||| |||||| |||    ||||||||||||||||||||| |||||||||||||||||    
T  4380422 acttctcttgaggttctgagaatcattggttgcccaacattagaggaacgatgcaaagagggaaca 4380357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 30678486 - 30678688
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  ||||||||    
T  30678486 ttaccagagcaaaattggg-aaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttgccggagggtattcgacacctc 30678584  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagag-gaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattcca 206  Q
    || || |||||   | |   |||        | |||||||| | | ||| | |||||||||||||  |||||||||||||||||||||||||||||||||    
T  30678585 acatctcttgaatatttataaat--------gtccaacatttgtgagaagggtgcaaagagggaatgggggaggattgggacaagatagctcatattcca 30678676  T
Q  207 acaataaagttt 218  Q
    | |||| |||||    
T  30678677 aaaatacagttt 30678688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 17419191 - 17419345
Alignment:
Q  63 aattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgca 162  Q
    ||||||||||| ||| |||||||||  ||||||||  ||||||||||||| |  ||| ||||||  ||| | |  | |||||||||||||||| ||||||    
T  17419191 aattgtgaaggtttgagatgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgca 17419290  T
Q  163 aagagggaacaggggaggattgggacaagatagctcatattccaacaataaagtt 217  Q
    | |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17419291 aggagggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 17419345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 30202867 - 30202743
Alignment:
Q  80 atgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggag 179  Q
    ||||||||  || ||||| ||||||||||||||||||||  | |||||||||   |||||||||| |||  ||||| ||||||| |||||||||||||||    
T  30202867 atgcttgctagaaggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaaggagggaacaggggag 30202768  T
Q  180 gattgggacaagatagctcatattc 204  Q
     | |||||||||||||| |||||||    
T  30202767 aactgggacaagatagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 30482261 - 30482158
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||| | |||| || ||||  ||||||| |||||||||||||||||||  ||||||||    
T  30482261 ttaccagagcaaaattggg-aaggtcttcaatcccttcgagctctacacatttcgagttgtagaggattgagatgcttgccggagggtattcgacacctc 30482163  T
Q  108 acttc 112  Q
    |||||    
T  30482162 acttc 30482158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 30058618 - 30058563
Alignment:
Q  226 actggtaagatctctatttccccttatttgcctcaattcactttatttttattcaa 281  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30058618 actggtaagatctctatttccccttatctgcctcaattcactttatttttattcaa 30058563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 30205288 - 30205102
Alignment:
Q  19 aaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttga 118  Q
    ||||| |||||||||  |||||||| ||||||||| | |||||   |||| ||| | || ||||||| ||||| |||||  |||| |||||||| || ||    
T  30205288 aaatttgggaaggtctgcaatccctccgaactctagatatttgtcgttgtaaagaactgagatgcttaccggaaggtattcgacatctcacttctctgga 30205189  T
Q  119 gcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattcc 205  Q
    |||||||||||||   ||||| |||||| |||| ||  ||||||| ||||||||||| ||||| ||| |||||||| | ||||||||    
T  30205188 gcttctgacaattcgtggttgtccaacactagaagagcgatgcaaggagggaacaggagaggactggtacaagatatcgcatattcc 30205102  T

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Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 29710349 - 29710414
Alignment:
Q  142 caacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    |||||||||||||| ||||||| |||||| || ||||||||| |||||||||||| ||| ||||||    
T  29710349 caacattagaggaacgatgcaaggagggagcaagggaggattaggacaagatagcgcatgttccaa 29710414  T

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Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 29851818 - 29851769
Alignment:
Q  268 ttatttttattcaaaaatatttttatatattctcaatcttgacttctttg 317  Q
    |||||||| ||||||||| |||||||||||||||| | ||||||||||||    
T  29851818 ttattttttttcaaaaatctttttatatattctcattgttgacttctttg 29851769  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 30474071 - 30473965
Alignment:
Q  101 acacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcat 200  Q
    ||||||||||||||||||| || ||| ||||   ||||||||||||||| ||||  |||  ||  | ||||| || ||||| |||||||||||||| ||     
T  30474071 acacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagatagcgcac 30473972  T
Q  201 attccaa 207  Q
    |||||||    
T  30473971 attccaa 30473965  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 30429671 - 30429542
Alignment:
Q  66 tgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaag 165  Q
    |||||| ||||| |||||||||| || |||||    |||||||| ||||||||| ||||| ||||| | ||||||||| |  ||  |||  |||| || |    
T  30429671 tgtgaaagattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaagg 30429572  T
Q  166 agggaacaggggaggattgggacaagatag 195  Q
    |||||| ||| ||||| |||||||||||||    
T  30429571 agggaataggagaggactgggacaagatag 30429542  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 17981602 - 17981534
Alignment:
Q  138 tgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattcca 206  Q
    ||||||||||| ||| |  ||||||| |||||||| || || || |||||||||||||| |||||||||    
T  17981602 tgcccaacattggagaagcgatgcaatgagggaaccggagaagactgggacaagatagcccatattcca 17981534  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 30481920 - 30481888
Alignment:
Q  218 tcaattttactggtaagatctctatttcccctt 250  Q
    |||||||||||||||||||||| ||||||||||    
T  30481920 tcaattttactggtaagatctcaatttcccctt 30481888  T

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Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 26706104 - 26705914
Alignment:
Q  25 gggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttct 124  Q
    ||||||||| |||||||||| | |||||| |||||||| ||||| ||||| ||||||||||||| ||||||||  ||||||||||||| |||||| ||||    
T  26706104 gggaaggtcttcaatcccttaggactctagagatttgggattgtaaaggaatgcgatgcttgccagagggtattcgacacctcacttctcttgagtttct 26706005  T
Q  125 gacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaacaataaag 215  Q
    || ||||  | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26706004 gagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaag 26705914  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 20298032 - 20298191
Alignment:
Q  48 actctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacat 147  Q
    |||||||||||||||  |||||||||||||| ||||||||| || || ||   |||||||||||| |||||||||||||| || |    |||||| ||||    
T  20298032 actctaaagatttggggttgtgaaggattgcaatgcttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacat 20298131  T
Q  148 tagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    || ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20298132 taaagttacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 20298191  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 20297921 - 20298023
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||   ||| |  ||||| ||||||||| ||||||||||||||||||   |||||||    
T  20297921 ttaccagagcaaatttggg-aaggtcttcaatcccttcgaactctaggaattagttattgtaaaggattgcaatgcttgccggagggtattcaacacctc 20298019  T
Q  108 actt 111  Q
    ||||    
T  20298020 actt 20298023  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 20303875 - 20304072
Alignment:
Q  8 ttaccagagcaaaattggggaaggtcctcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtatgagacacctc 107  Q
    ||||||||| |||||| |||||||||   |||||||| ||||| | | |||| | | |||| |||||||| |||||||||| || |||||  ||  ||||    
T  20303875 ttaccagag-aaaatttgggaaggtctgaaatcccttagaactatgatgattcgtagttgtaaaggattgagatgcttgcctgaaggtattcgattcctc 20303973  T
Q  108 acttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    |||||||||||| || |||  ||| | |  |||||||||||| ||||| | |||||   ||||||||| ||||||| |||||||||||| ||||||||||    
T  20303974 acttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaacaggcgaggatt-ggacaagatagcgcatattccaa 20304072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 13615501 - 13615451
Alignment:
Q  157 gatgcaaagagggaacaggggaggattgggacaagatagctcatattccaa 207  Q
    ||||||| ||||||||| |||| || |||||||||||||| ||||||||||    
T  13615501 gatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaa 13615451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 7098132 - 7098005
Alignment:
Q  80 atgcttgccggagggtatgagacacctcacttcacttgagcttctgacaattgagggttgcccaacattagaggaaagatgcaaagagggaacaggggag 179  Q
    ||||||||| || ||||| |||||||||||  |||||||     |||| ||||  || |||||||||||   |||  ||||||| ||||||||||||||     
T  7098132 atgcttgccagatggtattagacacctcaccgcacttgattcgttgactattgttggatgcccaacattgacggagcgatgcaaggagggaacaggggaa 7098033  T
Q  180 gattgggacaagatagctcatattccaa 207  Q
    || |||||||||||||| ||||||||||    
T  7098032 gactgggacaagatagcccatattccaa 7098005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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