View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444-Insertion-8 (Length: 285)
Name: NF5444-Insertion-8
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444-Insertion-8 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 29007543 - 29007807
Alignment:
| Q |
21 |
tgacccattctgccacaaacggaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgta |
120 |
Q |
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| T |
29007543 |
tgacccattctgccacaaacg-aagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgta |
29007641 |
T |
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| Q |
121 |
catgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttatta |
220 |
Q |
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| T |
29007642 |
catgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttatta |
29007741 |
T |
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| Q |
221 |
caaattttaa-ttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttt |
285 |
Q |
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| T |
29007742 |
caaattttaatttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttt |
29007807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 24 - 277
Target Start/End: Complemental strand, 21409673 - 21409421
Alignment:
| Q |
24 |
cccattctgccacaaacggaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacat |
123 |
Q |
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| T |
21409673 |
cccattctgccacaaacg-aagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatttgctattgtacat |
21409575 |
T |
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| Q |
124 |
gtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaa |
223 |
Q |
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| T |
21409574 |
gtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaacactgtcaatcatcacatatccaatgaa-catttgttattacca |
21409476 |
T |
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| Q |
224 |
attttaattca-agtctcgaaaaatacactttacattgttcccacctcttatttt |
277 |
Q |
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| T |
21409475 |
attttaatttagacattcgaaaaatacactttactttgttcctgccacttatttt |
21409421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 21461926 - 21461710
Alignment:
| Q |
61 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt |
160 |
Q |
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| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt |
21461827 |
T |
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| Q |
161 |
ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaattca-agtctcgaaaaatacactttacatt |
259 |
Q |
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| T |
21461826 |
acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaa-catttgttattactaattttaatttatacattcaaaaaatacactttacttt |
21461728 |
T |
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| Q |
260 |
gttcccacctcttatttt |
277 |
Q |
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| T |
21461727 |
gttcctgccacttatttt |
21461710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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