View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444-Insertion-9 (Length: 254)
Name: NF5444-Insertion-9
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 6483929 - 6484183
Alignment:
| Q |
15 |
tttttcagtgatagagggaggaacctagggtgtatcaaaagagggaattcttaggaattcaaatactgaaaattgagtgcttttatggtagaatgttggg |
114 |
Q |
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| T |
6483929 |
tttttcagtgatagagggaggaacctagggtgtatcaaaagagggaattcttaggaattcaaagactgaaaattgagtgcttttatggtagaatgttggg |
6484028 |
T |
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| Q |
115 |
aaacattctaaacattttgatgagta---------------cttgttgaaagctaattccctataacctgtgtatttctttgttagaaactcattgatag |
199 |
Q |
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| T |
6484029 |
aaacattctaaacattttgatgagtaaaaatcattgagtatcttgttgaaagctaattccctataacctgtgtatttctttgttagaaactcattgacag |
6484128 |
T |
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| Q |
200 |
tggatcgaagagttgctatttccctcaaatgtaggtcaaatttggtaaacaaata |
254 |
Q |
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| T |
6484129 |
tggatcgaagagttgctatttccctcaaatgtaggtcaaatttggtaaacaaata |
6484183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 38860482 - 38860380
Alignment:
| Q |
142 |
ttgttgaaagctaattccctataacctgtgtatttctttgttagaaactcattgatagtggatcgaagagttgctatttccctcaaatgtaggtcaaatt |
241 |
Q |
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| T |
38860482 |
ttgttgaaggctaatttcttataactattgtatctctttgtaagaaactatttgatagtggattggagagctgctctctccctcaattgtaggtcaaatt |
38860383 |
T |
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| Q |
242 |
tgg |
244 |
Q |
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| T |
38860382 |
tgg |
38860380 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 4055854 - 4055813
Alignment:
| Q |
170 |
tgtatttctttgttagaaactcattgatagtggatcgaagag |
211 |
Q |
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| T |
4055854 |
tgtatctctttgtaagaaactcattgatagtggattgaagag |
4055813 |
T |
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