View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_high_11 (Length: 280)
Name: NF5444_high_11
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 25825320 - 25825591
Alignment:
| Q |
1 |
gtattggtgatttcttgaagtttattagaaacccttttgctcactttctcatcacaaacattctctcccttgttcttcttctccttcaattctgaacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
25825320 |
gtattggtgatttcttgaagtttattagaaacccttttgctcattttctcatcacaaacaatctctctcttgttcttcttctccttcaattctgaacaac |
25825419 |
T |
|
| Q |
101 |
tcattttcttttttctcccacttgatttcaaccctttaccactctcaccttcatttccaaaactaagcacaaaaaagctctcattttcactcatttgaaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825420 |
tcattttcttttttctcccatttgatttcaaccctttaccactctcaccttcatttccaaaactaagcacaaaaaagctctcattttcactcatttgaaa |
25825519 |
T |
|
| Q |
201 |
agttggtggctctctaaaagacaatgttgaaccaactctcttatgatgcaaactctcaatcttccctttgct |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25825520 |
agttggtggctctctaaaagacaatgttgaaccaactctcttatgatgcaaactctcaatcttcccattgct |
25825591 |
T |
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