View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_high_4 (Length: 393)
Name: NF5444_high_4
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 26965552 - 26965927
Alignment:
| Q |
1 |
aaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965552 |
aaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaa |
26965651 |
T |
|
| Q |
101 |
gtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965652 |
gtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgc |
26965751 |
T |
|
| Q |
201 |
agtcgtcggcacaggtataaattggtctggagaactagaaactacacaagttaccttgagagaatgactagtggtagtggatccgacacccttcccctta |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965752 |
agtcgtcggcacaggtatacattggtctggagaactagaaactacacaagttaccttgagagaatgactagtggtagtggatccgacacccttcccctta |
26965851 |
T |
|
| Q |
301 |
ccactgggtggccgcttgtgtgaaggtccacccgacaacggatttgtaggtggtgtattcgccgatggagcatatg |
376 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965852 |
ccactgggtggccgtatgtgtgaaggtccacccgacaacggatttgtaggtggtgtattcgccgatggagcatatg |
26965927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 150 - 376
Target Start/End: Original strand, 26965380 - 26965606
Alignment:
| Q |
150 |
ggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacacaa |
249 |
Q |
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| T |
26965380 |
ggtaggtggaggtggaacataggtatgaggagatggaatctgtgtatgcgcagtcatcggcacaggtataaattggtctggagaactagaaactacagga |
26965479 |
T |
|
| Q |
250 |
gttaccttgagagaatgactagtggtagtggatccgacacccttccccttaccactgggtggccgcttgtgtgaaggtccacccgacaacggatttgtag |
349 |
Q |
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||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
26965480 |
gttaccttgtgagaatgactagcggtagtggatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtag |
26965579 |
T |
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| Q |
350 |
gtggtgtattcgccgatggagcatatg |
376 |
Q |
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|||||| |||| |||||||||| |||| |
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| T |
26965580 |
gtggtggattcaccgatggagcgtatg |
26965606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 26965874 - 26966106
Alignment:
| Q |
2 |
aaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgtgaatatgt---------------aggtggtagcgtgta |
86 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||| |||| | ||||||||| ||||| |
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| T |
26965874 |
aaggtccacccgacaacggatttgtaggtggtgtattcgccgatggagcatatgcatgatgtggatatattggtggtggataaataggtggtagtgtgta |
26965973 |
T |
|
| Q |
87 |
tcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatgga |
186 |
Q |
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||||||||||||| |||| ||||||||||| |||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
26965974 |
tcccgatggtgtatgttttggtggtgcataggcatgttgtggatacacaggtgatgaagtatgcgtaggtggaggcggagcatatgtatgaggagatgga |
26966073 |
T |
|
| Q |
187 |
atctgtgtatgtgcagtcgtcggcacaggtata |
219 |
Q |
| |
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||||| ||||||||| |||||||| ||||||| |
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| T |
26966074 |
gtctgtatatgtgcagccgtcggcataggtata |
26966106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 26965082 - 26965263
Alignment:
| Q |
149 |
gggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtct---ggagaactagaaactac |
245 |
Q |
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|||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||| |
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| T |
26965082 |
gggtaggtggaggcagagtataggtatgagaagatggagtccgtgtatgtgcagtcatcggcataggtataaactggtctaaaggagaaccagaaactac |
26965181 |
T |
|
| Q |
246 |
acaagttaccttgagagaatgactagtggtagtggatccgacacccttccccttaccactgggtggccgcttgtgtgaaggt |
327 |
Q |
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| T |
26965182 |
tcgagttaccttgcgagaacgaccgttagtagtggatgcgatatcctcccccttatcactaggtggacgcttctttgaaggt |
26965263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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