View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_high_5 (Length: 367)
Name: NF5444_high_5
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 38259334 - 38259662
Alignment:
| Q |
16 |
gttttgacggttaaaacaatcgaatgatttacatgagtaacgatcccagataacagaggaatcaggtaaggaagaaggaaaaggatttttcggaagagaa |
115 |
Q |
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| T |
38259334 |
gttttgacggttaaaacaatcgaatgatttacatgagtaacgatcccagataacagaggaatcaggtaaggaagaaggaaaaggatttttcggaagagaa |
38259433 |
T |
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| Q |
116 |
ctcgacgaagtttgtttcttcggcgtcggagagaaacatctccggcgagggagaggatgacaaccgcgaagaattaagctttcagcgagctctgaatcag |
215 |
Q |
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| T |
38259434 |
ctcgacgaagtttgtttcttcggcgtcggagagaaacatctccggcgagggagaggatgacaaccgcgaagaattaagctttcagcgagctctgaatcag |
38259533 |
T |
|
| Q |
216 |
aaggacaaatcgagaacggtgtgtaggtcatgtacttatgaagaagatcagggtggttatgacaagaagaagcaattggtgagatgtgtgagtagaggag |
315 |
Q |
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| T |
38259534 |
aaggacaaatcgagaacggtgtgtaggtcatgtacttatgaagaagatcagggtggttatgacaagaagaagcaattggtgagatgtgtgagtagaggag |
38259633 |
T |
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| Q |
316 |
tagatctgaagggattgatgattttgtgt |
344 |
Q |
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| T |
38259634 |
tagatctgaagggattgatgattttgtgt |
38259662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 393046 - 393155
Alignment:
| Q |
44 |
ttacatgagtaacgatcccagataacagaggaatcaggtaaggaagaaggaaaaggatttttcggaagagaactcgacgaagtttgtttcttcggcgtcg |
143 |
Q |
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| T |
393046 |
ttacatgagcagcgatcccttataacagaggaatcaggtaatgaagaaggaaaaggatttttcagaagagaattggacagagtttgtttcttcggcgccg |
393145 |
T |
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| Q |
144 |
gagagaaaca |
153 |
Q |
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| T |
393146 |
gagagaaaca |
393155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 12107445 - 12107478
Alignment:
| Q |
44 |
ttacatgagtaacgatcccagataacagaggaat |
77 |
Q |
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| T |
12107445 |
ttacatgagtaaccatcccagataacagaggaat |
12107478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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