View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5444_high_6 (Length: 343)

Name: NF5444_high_6
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5444_high_6
NF5444_high_6
[»] chr8 (4 HSPs)
chr8 (17-189)||(34217348-34217529)
chr8 (273-320)||(20733237-20733284)
chr8 (262-303)||(24655298-24655339)
chr8 (199-307)||(13385688-13385795)
[»] scaffold1699 (1 HSPs)
scaffold1699 (195-338)||(1287-1430)
[»] chr2 (9 HSPs)
chr2 (195-338)||(24699464-24699607)
chr2 (195-338)||(24690113-24690256)
chr2 (195-338)||(18973050-18973193)
chr2 (195-338)||(19884327-19884469)
chr2 (195-312)||(40390169-40390286)
chr2 (195-320)||(18981280-18981407)
chr2 (263-307)||(21068325-21068369)
chr2 (263-307)||(12370407-12370451)
chr2 (263-307)||(17879398-17879442)
[»] chr6 (12 HSPs)
chr6 (194-338)||(3917489-3917633)
chr6 (195-337)||(22232500-22232641)
chr6 (195-318)||(18909125-18909248)
chr6 (262-338)||(7245397-7245473)
chr6 (272-312)||(27616515-27616555)
chr6 (264-307)||(20048695-20048738)
chr6 (273-307)||(14473790-14473824)
chr6 (262-312)||(14779901-14779951)
chr6 (272-314)||(22926086-22926128)
chr6 (272-321)||(18436786-18436835)
chr6 (262-307)||(19169173-19169218)
chr6 (271-307)||(20040889-20040925)
[»] chr7 (11 HSPs)
chr7 (195-338)||(46461986-46462129)
chr7 (195-338)||(43005560-43005702)
chr7 (195-338)||(44413203-44413346)
chr7 (195-299)||(18157257-18157361)
chr7 (262-337)||(7528772-7528847)
chr7 (250-307)||(11578905-11578962)
chr7 (291-338)||(18157026-18157073)
chr7 (262-312)||(8913406-8913456)
chr7 (264-307)||(8810134-8810177)
chr7 (264-307)||(8817948-8817991)
chr7 (262-307)||(12608015-12608060)
[»] chr1 (9 HSPs)
chr1 (195-338)||(51967950-51968093)
chr1 (195-337)||(15473770-15473912)
chr1 (270-323)||(2335995-2336048)
chr1 (262-307)||(19763292-19763337)
chr1 (262-307)||(20521314-20521359)
chr1 (265-320)||(23950220-23950275)
chr1 (265-320)||(28993459-28993514)
chr1 (263-307)||(16884586-16884630)
chr1 (272-312)||(21819943-21819983)
[»] scaffold0043 (1 HSPs)
scaffold0043 (216-338)||(33132-33254)
[»] chr4 (5 HSPs)
chr4 (195-338)||(8657548-8657691)
chr4 (270-323)||(22175776-22175829)
chr4 (263-307)||(47522534-47522578)
chr4 (273-314)||(1908520-1908561)
chr4 (197-301)||(18483211-18483315)
[»] scaffold0301 (1 HSPs)
scaffold0301 (221-338)||(8975-9092)
[»] chr3 (15 HSPs)
chr3 (195-338)||(35491056-35491199)
chr3 (199-338)||(37468052-37468193)
chr3 (270-326)||(37470213-37470269)
chr3 (270-323)||(49967428-49967481)
chr3 (263-307)||(14252468-14252512)
chr3 (195-307)||(17218047-17218159)
chr3 (273-320)||(30068618-30068665)
chr3 (272-314)||(19445428-19445470)
chr3 (272-314)||(19447253-19447295)
chr3 (250-307)||(14282195-14282252)
chr3 (271-312)||(15619771-15619812)
chr3 (271-312)||(15627119-15627160)
chr3 (263-307)||(15692630-15692673)
chr3 (263-307)||(15709246-15709289)
chr3 (263-307)||(23288075-23288119)
[»] scaffold0119 (1 HSPs)
scaffold0119 (194-338)||(40093-40237)
[»] chr5 (4 HSPs)
chr5 (200-338)||(30249351-30249487)
chr5 (205-312)||(13358447-13358554)
chr5 (262-313)||(38227822-38227873)
chr5 (273-319)||(22961854-22961900)
[»] scaffold0029 (1 HSPs)
scaffold0029 (270-323)||(38011-38064)
[»] scaffold0022 (1 HSPs)
scaffold0022 (257-338)||(148957-149038)
[»] scaffold0815 (1 HSPs)
scaffold0815 (271-307)||(4995-5031)
[»] scaffold0582 (1 HSPs)
scaffold0582 (272-312)||(318-358)
[»] scaffold0290 (1 HSPs)
scaffold0290 (195-307)||(7476-7588)
[»] scaffold1575 (1 HSPs)
scaffold1575 (264-307)||(25-68)
[»] scaffold0105 (1 HSPs)
scaffold0105 (264-307)||(11093-11136)
[»] scaffold0058 (1 HSPs)
scaffold0058 (250-313)||(73275-73338)
[»] scaffold0031 (1 HSPs)
scaffold0031 (257-320)||(33646-33709)
[»] scaffold0186 (1 HSPs)
scaffold0186 (272-314)||(15678-15720)
[»] scaffold0555 (1 HSPs)
scaffold0555 (250-311)||(5218-5279)
[»] scaffold0002 (1 HSPs)
scaffold0002 (262-307)||(362808-362853)
[»] scaffold0265 (1 HSPs)
scaffold0265 (272-312)||(12826-12866)
[»] scaffold0167 (1 HSPs)
scaffold0167 (272-312)||(8056-8096)
[»] scaffold0050 (1 HSPs)
scaffold0050 (263-307)||(41218-41262)
[»] scaffold0032 (1 HSPs)
scaffold0032 (263-307)||(29066-29110)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 34217348 - 34217529
Alignment:
Q  17 atatgtgcaaaa-aacatgaggtttatgttgatgatttctacattgctattcatcccgacaaaattcatctcgagcggttcacgaaaagcttataaccaa 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217348 atatgtgcaaaaaaacatgaggtttatgttgatgatttctacattgctattcatcccgacaaaattcatctcgagcggttcacgaaaagcttataaccaa 34217447  T
Q  116 ttaaattgtttccttacccgaaatcatgggag--------gtcatggctataggtaaagaatagatgttatgtaaagtattg 189  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||    
T  34217448 ttaaattgtttccttacccgaaatcatgggaggtcatgccgtcatggctataggtcaagaatagatgttatgtaaagtattg 34217529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 20733237 - 20733284
Alignment:
Q  273 aaaattcggcagaaaggtattttaaaatacttcatctttgtaccgatt 320  Q
    ||||||||||||| |||||||||||||||| |||| ||||| ||||||    
T  20733237 aaaattcggcagagaggtattttaaaatacctcatttttgttccgatt 20733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 24655339 - 24655298
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatact 303  Q
    |||||||| ||||||||||||||| |||||||| ||||||||    
T  24655339 cttttcagtgaaaaattcggcagagaggtatttaaaaatact 24655298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 13385688 - 13385795
Alignment:
Q  199 atacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattttaaa 298  Q
    ||||| |||||||| | |||||| |||| |||||||||  |||| ||||  |||||| | || ||||||||||||||||||| || | | ||| ||||||    
T  13385688 ataccccaatttttga-ctaaaatcctacattcatacagtctctgacccggaatattctctgacttttcagagaaaaattcgacaaagaagtactttaaa 13385786  T
Q  299 atacttcat 307  Q
    |||| ||||    
T  13385787 atacctcat 13385795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1699 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 1430 - 1287
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  1430 tgtcataccccaattttttacctaagaacctacattcatacaccctctaacccataatattctctggctttttagagaaaaattcggcagaaaggtattt 1331  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||| ||| |||||||||||||||||||||||||||||||||||    
T  1330 taaattacctcatctttgtaccgattccgacccttcttctcact 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 24699464 - 24699607
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  24699464 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattctcttgcttttcagagaaaaattcggcagaaaggtattt 24699563  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  24699564 taaaatacctcatctttgtaccgattccgacccttcttctcact 24699607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 24690113 - 24690256
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||    
T  24690113 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaacccataatattctcttgcttttcagagaaaaattcggcaaaaaggtattt 24690212  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  24690213 taaaatacctcatctttgtaccgattccgacccttcttctcact 24690256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 18973193 - 18973050
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | | || || ||| ||||||||||| ||| |||||||||||| || | |||||||||||||||||||||||||||||||||    
T  18973193 tgtcataccccaatttttgaccaaagaatctacattcatacaccatctgacccataatattcttagacttttcagagaaaaattcggcagaaaggtattt 18973094  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||| |||| |||||||||||    
T  18973093 taaaatacctcatctttgtaccgattctgacctttcttctcact 18973050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 19884469 - 19884327
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||| |||||||||||| | |||||||| || ||||||||||||| | | ||| |||||| | || ||||||| | ||||| ||| |||||||||||||    
T  19884469 tgtcaaacctcaatttttgacctaaaaacttacattcatacaccctatgatccaaaatattctctgacttttcaaaaaaaaaatcgacagaaaggtattt 19884370  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||||||||| ||||||||||    
T  19884369 taaaatacctcatctttgtaccgattccgaccc-tcttctcact 19884327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 40390286 - 40390169
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    |||||| || ||||||||||  ||| | |||||||||||||| ||||| | ||| |||||| | || ||||| ||| |||||||||||||| || || ||    
T  40390286 tgtcattccccaattttttacgtaagatcctatattcatacatcctctgatccaaaatattatctgactttttagataaaaattcggcagagagatactt 40390187  T
Q  295 taaaatacttcatctttg 312  Q
    |||||||| |||| ||||    
T  40390186 taaaatacctcatttttg 40390169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 18981407 - 18981280
Alignment:
Q  195 tgtcatacctcaatttttta--tctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtat 292  Q
    |||||||||||||||||| |  ||||| | |||| |||||||| || | | || |  |||||| ||||  ||||||||||||||||| | |||||| |||    
T  18981407 tgtcatacctcaatttttgacctctaagatcctacattcatacgccttttgacactgaatattctttgatttttcagagaaaaattcagtagaaagttat 18981308  T
Q  293 tttaaaatacttcatctttgtaccgatt 320  Q
    |||||||||| |||| ||| | ||||||    
T  18981307 tttaaaatacctcatttttattccgatt 18981280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 21068325 - 21068369
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| ||||||||| |||||||||||||||||||||| ||||    
T  21068325 ttttcagtgaaaaattcagcagaaaggtattttaaaatacctcat 21068369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 12370451 - 12370407
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||  |||||||||||| |||||||||||||||||| ||||    
T  12370451 ttttcagtaaaaaattcggcaaaaaggtattttaaaatacctcat 12370407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 17879398 - 17879442
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||| ||| |||||||||||||||| ||||    
T  17879398 ttttcaaagaaaaattcggtagagaggtattttaaaatacctcat 17879442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 194 - 338
Target Start/End: Complemental strand, 3917633 - 3917489
Alignment:
Q  194 gtgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtatt 293  Q
    |||||||||| |||||||| | |||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  3917633 gtgtcataccccaatttttaacctaagaacctacattcatacaccctctaacccataatattctctggcttttcagagaaaaattcggcataaaggtatt 3917534  T
Q  294 ttaaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||    
T  3917533 ttaaaatacctcatctttataccaattccgacccttcttctcact 3917489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 195 - 337
Target Start/End: Complemental strand, 22232641 - 22232500
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| ||||||||||||||| |||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  22232641 tgtcataccccaatttttaacctaagaacctacattcatacaccctctgacccataatattctctgg-ttttcagagaaacattcggcagaaaggtattt 22232543  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcac 337  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  22232542 taaaatacctcatctttgtaccgattccgactcttcttctcac 22232500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 18909125 - 18909248
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  18909125 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccaaaatattctttggcttttcagagaaaaattcggcagaaatgtattt 18909224  T
Q  295 taaaatacttcatctttgtaccga 318  Q
    |||||||| |||||||| ||||||    
T  18909225 taaaatacctcatctttataccga 18909248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 7245473 - 7245397
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||| |||  |||||||||||||||| |||||| | |||||||||| |||| ||||||||||    
T  7245473 cttttcagtgaaaaattcgacagggaggtattttaaaatacatcatctatataccgattccaacccctcttctcact 7245397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 27616515 - 27616555
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  27616515 aaaaattcggcagaaaggtattttaaaatacctcatatttg 27616555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 20048738 - 20048695
Alignment:
Q  264 tttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  20048738 tttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 20048695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 14473790 - 14473824
Alignment:
Q  273 aaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||||||||||||||||||||||||| ||||    
T  14473790 aaaattcggcagaaaggtattttaaaatacctcat 14473824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 14779951 - 14779901
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    ||||||||  |||||||||||||| |||||||||||||||| |||| ||||    
T  14779951 cttttcagtaaaaaattcggcagagaggtattttaaaatacctcatttttg 14779901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 22926128 - 22926086
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttgta 314  Q
    |||| |||||||||||||||||||||||||| |||| ||||||    
T  22926128 aaaatttcggcagaaaggtattttaaaatacctcatttttgta 22926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 18436786 - 18436835
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattc 321  Q
    |||||||||||||| | |||||||||||||| |||| ||||| |||||||    
T  18436786 aaaaattcggcagagaagtattttaaaatacctcatttttgttccgattc 18436835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 19169173 - 19169218
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| ||||||||||||||| ||||||||| |||||| ||||    
T  19169173 cttttcagtgaaaaattcggcagagaggtattttgaaatacctcat 19169218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 20040925 - 20040889
Alignment:
Q  271 gaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  20040925 gaaaaattcggcaggaaggtattttaaaatacctcat 20040889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 46462129 - 46461986
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||||| | ||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  46462129 tgtcataccccaattttttacctaagaacctagattcatacaccctttgacctataatattctctggcttttcagagaaaaattcggcagaaaggtattt 46462030  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  46462029 taaaatacctcatctttgtaccgattccgaccctccttctcact 46461986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 43005702 - 43005560
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||||||| ||||| |||||| ||||||||||| || |||||||||||||||||||||||    
T  43005702 tgtcataccccaattttttacctaagaacctacattcatacaccctctgacccaaaatattctttggcttttc-gaaaaaaattcggcagaaaggtattt 43005604  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||||||||| ||||||||||    
T  43005603 taaaatacctcatctttgtaccgattccgacccctcttctcact 43005560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 44413346 - 44413203
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| ||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||| |||||||||    
T  44413346 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccataatattctatggctttttagagaaaaattcggcagtaaggtattt 44413247  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||| | ||||||||||||| |||| |||| |||||||||||    
T  44413246 taaaatccctcatctttgtaccaattctgacctttcttctcact 44413203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 18157361 - 18157257
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| || ||||| | |||| |||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  18157361 tgtcataccccagtttttgacctaagaacctacattcatacaccctctgacccataatattctctggcttttcagagaaaaattcggcagaaaggtattt 18157262  T
Q  295 taaaa 299  Q
    |||||    
T  18157261 taaaa 18157257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 7528847 - 7528772
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccgacccttcttctcac 337  Q
    |||||||| ||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  7528847 cttttcagtgaaaaattcagcagggaggtattttaaaatacctcatctttgtaccgattccgacccctcttctcac 7528772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 11578905 - 11578962
Alignment:
Q  250 aatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  11578905 aatattctttggcttttcaaagaaaaattcggcagagaggtattttaaaatacctcat 11578962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 18157073 - 18157026
Alignment:
Q  291 attttaaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||    
T  18157073 attttaaaatgcctcatctttgtaccgattccgacccttcttctcact 18157026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 8913456 - 8913406
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||| ||||    
T  8913456 cttttcagtgaaaaattcggcagagaggtattttaaaatacctcatttttg 8913406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 8810134 - 8810177
Alignment:
Q  264 tttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  8810134 tttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 8810177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 8817948 - 8817991
Alignment:
Q  264 tttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  8817948 tttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 8817991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 12608060 - 12608015
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| ||||||||||||||  |||||||||||||||| ||||    
T  12608060 cttttcagtgaaaaattcggcagggaggtattttaaaatacctcat 12608015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 51967950 - 51968093
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||    
T  51967950 tgtcataccccaattttttacctaagaacctacattcatacaccctctgacccataatattctctggcttttcaaagaaaaattcggcagaaaggtattt 51968049  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||| |||| |||||||||||    
T  51968050 taaaatacctcatctttgtaccgattctgaccattcttctcact 51968093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 337
Target Start/End: Complemental strand, 15473912 - 15473770
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| | | || ||||||||||||||| |||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  15473912 tgtcataccccaatttttgacctaagagcatacattcatacaccctctgacccataatattctcgagcttttcagagaaaaattcggcagaaaggtattt 15473813  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcac 337  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15473812 taaaatacttcatctttgtaccgattccgacccttcttctcac 15473770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 2336048 - 2335995
Alignment:
Q  270 agaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccg 323  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||    
T  2336048 agaaaaattcgacagagaggtattttaaaatacctcatctttgtaccaattccg 2335995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 19763337 - 19763292
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||    
T  19763337 cttttcagtgaaaaattcggcagataggtattttaaaatacctcat 19763292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 20521359 - 20521314
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||    
T  20521359 cttttcagtgaaaaattcggcataaaggtattttaaaatacctcat 20521314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 23950220 - 23950275
Alignment:
Q  265 ttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgatt 320  Q
    ||||| ||||| ||||||||| |||||||||||||||| |||| ||||| ||||||    
T  23950220 ttcagtgaaaatttcggcagagaggtattttaaaatacctcatttttgttccgatt 23950275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 28993514 - 28993459
Alignment:
Q  265 ttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgatt 320  Q
    ||||| ||||| ||||||||| |||||||||||||||| |||| ||||| ||||||    
T  28993514 ttcagtgaaaatttcggcagagaggtattttaaaatacctcatttttgttccgatt 28993459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16884586 - 16884630
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| ||||||||||||| ||| |||||||||||||| ||||    
T  16884586 ttttcagtgaaaaattcggcaaaaaagtattttaaaatacctcat 16884630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 21819943 - 21819983
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  21819943 aaaatttcggcagagaggtattttaaaatacttcatttttg 21819983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 33254 - 33132
Alignment:
Q  216 ctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtac 315  Q
    |||| |||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33254 ctaagaacctacattcatacaccctctgacccataatattctctggcttttcagagaaaaattcggcagaaaagtattttaaaatacttcatctttgtac 33155  T
Q  316 cgattccgacccttcttctcact 338  Q
    |||||||||||||||||||||||    
T  33154 cgattccgacccttcttctcact 33132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 8657548 - 8657691
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| ||||||||||||| | |||||||||||| | |||||||| ||| |||||||||||| ||||||||||    
T  8657548 tgtcataccccaatttttgacctaagaacctacattcatacaccctttgacccataatattctctggctttttagaaaaaaattcggcataaaggtattt 8657647  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  8657648 taaaatacctcatctttgtaccgattccgacccttcttctcact 8657691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 22175829 - 22175776
Alignment:
Q  270 agaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccg 323  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  22175829 agaaaaattcggcagagaggtattttaaaatacctcatctttgtaccaattccg 22175776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 47522578 - 47522534
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||    
T  47522578 ttttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 47522534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 1908520 - 1908561
Alignment:
Q  273 aaaattcggcagaaaggtattttaaaatacttcatctttgta 314  Q
    ||||||||||||| |||||||||||||||| |||| ||||||    
T  1908520 aaaattcggcagagaggtattttaaaatacctcatttttgta 1908561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 18483315 - 18483211
Alignment:
Q  197 tcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtatttta 296  Q
    |||||||||||||||||| |||| | ||||  ||||||||| |||| | ||  || ||| |||| ||||||| |||||| |||| |||| |||| ||||     
T  18483315 tcatacctcaattttttacctaagatcctactttcatacactctcttatccgaaaaattctttgacttttcaaagaaaatttcgacagataggtcttttg 18483216  T
Q  297 aaata 301  Q
    |||||    
T  18483215 aaata 18483211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 221 - 338
Target Start/End: Original strand, 8975 - 9092
Alignment:
Q  221 aacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgatt 320  Q
    |||||| ||||||||||||||| ||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8975 aacctacattcatacaccctctgacccataatattccctggcttttcggagaaaaattcggcagaaaggtattttaaaatacctcatctttgtaccgatt 9074  T
Q  321 ccgacccttcttctcact 338  Q
    ||||||||||||||||||    
T  9075 ccgacccttcttctcact 9092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 35491056 - 35491199
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| |||||| ||||||||||||||| ||| | |||||| | ||||||||||||||||||||||||||||| ||||||    
T  35491056 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgacctagaatattctctggcttttcagagaaaaattcggcagaaaagtattt 35491155  T
Q  295 taaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||||| ||||||||||||   |||||| || ||||||||||    
T  35491156 taaaatacctcatctttgtacaagttccgatccctcttctcact 35491199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 338
Target Start/End: Original strand, 37468052 - 37468193
Alignment:
Q  199 atacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcag--agaaaaattcggcagaaaggtatttta 296  Q
    |||||||||||||| |  ||| ||| |||||||||||||||||| |   | |||||||||||||||||  |  | ||||| ||| |||||||||||||||    
T  37468052 atacctcaatttttgacttaagaacttatattcatacaccctctgatttagaatattttttggctttttgggaaaaaaaaatcgacagaaaggtatttta 37468151  T
Q  297 aaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  37468152 aaatacctcatttttgtaccgattccgacccatcttctcact 37468193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 37470213 - 37470269
Alignment:
Q  270 agaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccgacc 326  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||    
T  37470213 agaaaaattcggcagagaggtattttaaaatacctcatctttgtaccaattccgacc 37470269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 49967428 - 49967481
Alignment:
Q  270 agaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccg 323  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  49967428 agaaaaattcggcagagaggtattttaaaatacatcatctttgtaccaattccg 49967481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 14252468 - 14252512
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||    
T  14252468 ttttcagtgaaaaattcggcagagaggtattttaaaatacctcat 14252512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 17218159 - 17218047
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||| | |||| |||||||| || ||| ||||  |||| | |||  ||||||| || ||| ||| ||||||||||||||    
T  17218159 tgtcataccccaatttttgacctaacaccctacattcatacgccgtctgaccctgaatagtctttaacttttcaaaggaaatttcagcagaaaggtattt 17218060  T
Q  295 taaaatacttcat 307  Q
    |||||||| ||||    
T  17218059 taaaatacctcat 17218047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 30068665 - 30068618
Alignment:
Q  273 aaaattcggcagaaaggtattttaaaatacttcatctttgtaccgatt 320  Q
    ||||||||||||| |||||||||||||||| |||| ||||| ||||||    
T  30068665 aaaattcggcagagaggtattttaaaatacctcatttttgttccgatt 30068618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 19445428 - 19445470
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttgta 314  Q
    |||| |||||||||||||||||||||||||| |||| ||||||    
T  19445428 aaaatttcggcagaaaggtattttaaaatacctcatttttgta 19445470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 19447253 - 19447295
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttgta 314  Q
    |||| |||||||||||||||||||||||||| |||| ||||||    
T  19447253 aaaatttcggcagaaaggtattttaaaatacctcatttttgta 19447295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 14282195 - 14282252
Alignment:
Q  250 aatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||| ||||||| |||||| ||||| ||| |||||||||||||||| ||||    
T  14282195 aatattctttgacttttcaaagaaaatttcggtagagaggtattttaaaatacctcat 14282252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 15619771 - 15619812
Alignment:
Q  271 gaaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    ||||||||||||||| |||||||||||||||| |||| ||||    
T  15619771 gaaaaattcggcagagaggtattttaaaatacctcatttttg 15619812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 15627119 - 15627160
Alignment:
Q  271 gaaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    ||||||||||||||| |||||||||||||||| |||| ||||    
T  15627119 gaaaaattcggcagagaggtattttaaaatacctcatttttg 15627160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 15692630 - 15692673
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||    
T  15692630 ttttcaga-aaaaattcggcagagaggtattttaaaatacctcat 15692673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 15709246 - 15709289
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||    
T  15709246 ttttcaga-aaaaattcggcagagaggtattttaaaatacctcat 15709289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 23288119 - 23288075
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| ||||||||||||||  |||||||||||||||| ||||    
T  23288119 ttttcagtgaaaaattcggcagggaggtattttaaaatacctcat 23288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 338
Target Start/End: Complemental strand, 40237 - 40093
Alignment:
Q  194 gtgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtatt 293  Q
    |||||||||  |||||||| | |||| |||||| ||||||||||||| | | ||| ||||||   |||||||| ||||||||||||||||||||||||||    
T  40237 gtgtcatactccaatttttgacctaagaacctacattcatacaccctttgatccagaatattcactggctttttagagaaaaattcggcagaaaggtatt 40138  T
Q  294 ttaaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    ||||| ||| |||||||||||| ||||||||||  ||||||||||    
T  40137 ttaaagtacctcatctttgtacggattccgacctctcttctcact 40093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 30249351 - 30249487
Alignment:
Q  200 tacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaa 299  Q
    |||| |||||||| | |||  |||||| ||||||||||| ||| || || |||||| | ||| |||||| | ||||  |||||||||| |||||||||||    
T  30249351 taccccaatttttgacctaggaacctacattcatacaccgtctgactcagaatattctctggtttttcaaaaaaaa--tcggcagaaaagtattttaaaa 30249448  T
Q  300 tacttcatctttgtaccgattccgacccttcttctcact 338  Q
    ||| |||||||||||||||||||||||| ||||||||||    
T  30249449 tacctcatctttgtaccgattccgacccctcttctcact 30249487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 13358447 - 13358554
Alignment:
Q  205 caattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatactt 304  Q
    |||||||| | |||| | |||| ||||||||||||||| |  |  |||||| | || ||||||| ||||||||||| |||| ||||| |||||||||| |    
T  13358447 caatttttgacctaagaccctacattcatacaccctctgatacggaatattatctgacttttcacagaaaaattcgacagagaggtactttaaaatacct 13358546  T
Q  305 catctttg 312  Q
    ||| ||||    
T  13358547 catttttg 13358554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 38227873 - 38227822
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgt 313  Q
    |||||||| ||||||||||||||| ||||| |||||||||| |||| |||||    
T  38227873 cttttcagtgaaaaattcggcagagaggtactttaaaatacctcatttttgt 38227822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 22961900 - 22961854
Alignment:
Q  273 aaaattcggcagaaaggtattttaaaatacttcatctttgtaccgat 319  Q
    ||||||||||||| |||||||||||||||| |||| ||||| |||||    
T  22961900 aaaattcggcagagaggtattttaaaatacctcatttttgttccgat 22961854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 38064 - 38011
Alignment:
Q  270 agaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccg 323  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||    
T  38064 agaaaaattcgacagagaggtattttaaaatacctcatctttgtaccaattccg 38011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 148957 - 149038
Alignment:
Q  257 tttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgattccgacccttcttctcact 338  Q
    |||| |||||| ||||||||||||||||| | |||||||||||||  |||| ||||| |||||| ||  || ||||||||||    
T  148957 tttgacttttcggagaaaaattcggcagagatgtattttaaaatatctcatttttgttccgatttcggaccctcttctcact 149038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 5031 - 4995
Alignment:
Q  271 gaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5031 gaaaaattcggcagagaggtattttaaaatacttcat 4995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 358 - 318
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  358 aaaaattcggcagaaaggtattttaaaatacctcatatttg 318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 7588 - 7476
Alignment:
Q  195 tgtcatacctcaattttttatctaaaaacctatattcatacaccctctaacccataatattttttggcttttcagagaaaaattcggcagaaaggtattt 294  Q
    ||||||||| |||||||| | |||||| |||| |||||||| || | | ||    |||||| ||||  ||||||||||||||||||| ||| || |||||    
T  7588 tgtcataccccaatttttgacctaaaatcctacattcatacgccttttgacattgaatattctttgatttttcagagaaaaattcggtagagagttattt 7489  T
Q  295 taaaatacttcat 307  Q
    |||||||| ||||    
T  7488 taaaatacctcat 7476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1575 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 25 - 68
Alignment:
Q  264 tttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  25 tttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 11093 - 11136
Alignment:
Q  264 tttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  11093 tttcagtgaaaaattcggcaggaaggtattttaaaatacctcat 11136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 73338 - 73275
Alignment:
Q  250 aatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgt 313  Q
    |||||| |||| |||| ||||||||| |||| |||| |||||||||||||||| |||| |||||    
T  73338 aatattctttgactttgcagagaaaatttcgacagagaggtattttaaaatacctcatttttgt 73275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 33709 - 33646
Alignment:
Q  257 tttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcatctttgtaccgatt 320  Q
    |||| ||||||| || ||| ||||||||| |||||||||||||||| |||| ||||| ||||||    
T  33709 tttgacttttcaaaggaaatttcggcagataggtattttaaaatacctcatttttgttccgatt 33646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 15720 - 15678
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttgta 314  Q
    |||| |||||||||||||||||||||||||| |||| ||||||    
T  15720 aaaatttcggcagaaaggtattttaaaatacctcatttttgta 15678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 5279 - 5218
Alignment:
Q  250 aatattttttggcttttcagagaaaaattcggcagaaaggtattttaaaatacttcatcttt 311  Q
    |||||| |||| ||||||| |||||| |||| ||| |||||||||||||| || ||||||||    
T  5279 aatattctttgacttttcaaagaaaatttcgacaggaaggtattttaaaacacctcatcttt 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 362853 - 362808
Alignment:
Q  262 cttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    |||||||| ||||||||||||||| |||||||||||| ||| ||||    
T  362853 cttttcagtgaaaaattcggcagagaggtattttaaactacctcat 362808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 12866 - 12826
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  12866 aaaatttcggcagagaggtattttaaaatacttcatttttg 12826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 8056 - 8096
Alignment:
Q  272 aaaaattcggcagaaaggtattttaaaatacttcatctttg 312  Q
    |||||||||||||  |||||||||||||||| |||||||||    
T  8056 aaaaattcggcagggaggtattttaaaatacctcatctttg 8096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 41262 - 41218
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| |||||||||| |||| |||||||||||||||| ||||    
T  41262 ttttcagtgaaaaattcgacagagaggtattttaaaatacctcat 41218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 29110 - 29066
Alignment:
Q  263 ttttcagagaaaaattcggcagaaaggtattttaaaatacttcat 307  Q
    ||||||| ||||||||||||||| ||||||||| |||||| ||||    
T  29110 ttttcagtgaaaaattcggcagagaggtattttgaaatacctcat 29066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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