View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5444_high_9 (Length: 301)

Name: NF5444_high_9
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5444_high_9
NF5444_high_9
[»] chr8 (6 HSPs)
chr8 (51-283)||(15151184-15151416)
chr8 (150-283)||(19442366-19442499)
chr8 (150-283)||(19578517-19578650)
chr8 (149-256)||(16821972-16822079)
chr8 (18-64)||(15151135-15151181)
chr8 (149-205)||(26738332-26738388)
[»] chr2 (7 HSPs)
chr2 (148-294)||(17673395-17673541)
chr2 (148-294)||(17628324-17628470)
chr2 (152-279)||(1644587-1644714)
chr2 (152-280)||(19569559-19569687)
chr2 (149-265)||(37081337-37081453)
chr2 (148-217)||(24578611-24578680)
chr2 (193-280)||(3563566-3563653)
[»] chr1 (4 HSPs)
chr1 (148-280)||(28538479-28538611)
chr1 (143-279)||(2900379-2900512)
chr1 (152-256)||(23971060-23971164)
chr1 (148-282)||(27908274-27908408)
[»] chr4 (4 HSPs)
chr4 (151-283)||(6136078-6136210)
chr4 (150-282)||(17405141-17405273)
chr4 (152-264)||(2946637-2946749)
chr4 (148-195)||(14134009-14134056)
[»] chr3 (2 HSPs)
chr3 (148-283)||(9021772-9021907)
chr3 (198-250)||(25226627-25226679)
[»] chr6 (3 HSPs)
chr6 (148-264)||(27991531-27991647)
chr6 (148-240)||(13627803-13627895)
chr6 (91-126)||(27991667-27991702)
[»] chr5 (5 HSPs)
chr5 (150-278)||(15023568-15023696)
chr5 (173-265)||(21714317-21714409)
chr5 (148-208)||(2808440-2808500)
chr5 (173-265)||(21788231-21788323)
chr5 (182-272)||(13502447-13502537)
[»] chr7 (3 HSPs)
chr7 (159-265)||(4633993-4634099)
chr7 (152-256)||(32238918-32239022)
chr7 (153-207)||(29676952-29677006)
[»] scaffold0010 (1 HSPs)
scaffold0010 (198-250)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 51 - 283
Target Start/End: Original strand, 15151184 - 15151416
Alignment:
Q  51 tcatgatgcaattataatgaagtaatcagggtcggtcttatgaatttggatgtcttgagcaaatcaagagagtggtgctctgtnnnnnnnnntaatccca 150  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||         ||||||||    
T  15151184 tcataatgcaattataatgaagtaatcagggtcgatcttatgaatttggatgtcttggacaaatcaagagagtggtgctctgtaaaaaaaaataatccca 15151283  T
Q  151 caaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaa 250  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||    
T  15151284 caaaaaatgataaaattaacagaaatgaacgaaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatcattgatatgtgaa 15151383  T
Q  251 cgaattggctctaagccaggatccatgttccag 283  Q
    |||||||||||||||| ||||||||| ||||||    
T  15151384 cgaattggctctaagctaggatccatattccag 15151416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 19442366 - 19442499
Alignment:
Q  150 acaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtga 249  Q
    |||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||| ||| ||| | | |||||||||||| ||||||| ||||||||    
T  19442366 acaaaaaatgataagattaagagaaatgaatgaaaatactattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtga 19442465  T
Q  250 acgaattggctctaagccaggatccatgttccag 283  Q
    |  || | ||||||||  || |||||||||||||    
T  19442466 aacaaatagctctaagttagaatccatgttccag 19442499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 19578517 - 19578650
Alignment:
Q  150 acaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtga 249  Q
    |||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||| ||| ||| | | |||||||||||| ||||||| ||||||||    
T  19578517 acaaaaaatgataagattaagagaaatgaatgaaaatactattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtga 19578616  T
Q  250 acgaattggctctaagccaggatccatgttccag 283  Q
    |  || | ||||||||  || |||||||||||||    
T  19578617 aacaaatagctctaagttagaatccatgttccag 19578650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 16821972 - 16822079
Alignment:
Q  149 cacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtg 248  Q
    |||||||| |||||| |||||||||||||| |  ||||||||||||||||||||||||||||| | |||||| ||||||||||| |||| || || ||||    
T  16821972 cacaaaaattgataagattaagagaaatgatctaaaagactattaaacatttcatttgacattgtacaagaaaaacacaagtatgaatcattgaagtgtg 16822071  T
Q  249 aacgaatt 256  Q
    ||| ||||    
T  16822072 aaccaatt 16822079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 15151135 - 15151181
Alignment:
Q  18 ggttttatgaaattgttgaaacttattatgatttcatgatgcaatta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15151135 ggttttatgaaattgttgaaacttattatgatttcatgatgcaatta 15151181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 26738388 - 26738332
Alignment:
Q  149 cacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcattt 205  Q
    |||||||||| |||| | ||||||||||||| | ||||||||| | |||||||||||    
T  26738388 cacaaaaaattataagaataagagaaatgaatgaaaagactatcatacatttcattt 26738332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 294
Target Start/End: Complemental strand, 17673541 - 17673395
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgt 247  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||| ||||||    
T  17673541 ccacaaaaaatgataagattaagagaaatgaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgt 17673442  T
Q  248 gaacgaattggctctaagccaggatccatgttccagtgcctatgctt 294  Q
    |||| |||| ||||||||| ||||||||||||| || | ||||||||    
T  17673441 gaaccaattagctctaagctaggatccatgttcaagagtctatgctt 17673395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 294
Target Start/End: Complemental strand, 17628470 - 17628324
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgt 247  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||| ||||||    
T  17628470 ccacaaaaaatgataagattaagagaaacgaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgt 17628371  T
Q  248 gaacgaattggctctaagccaggatccatgttccagtgcctatgctt 294  Q
    |||  |||| ||||||||| ||||||||||||| || | ||||||||    
T  17628370 gaatcaattagctctaagctaggatccatgttcaagagtctatgctt 17628324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 1644587 - 1644714
Alignment:
Q  152 aaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaac 251  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| || | |||| ||||||| ||||||||||    
T  1644587 aaaaaatgataagattaagagaaataaatggaaagactattaaacatttcatttgacattgtgcaagaagagcataggtatgaatctttgaaatgtgaac 1644686  T
Q  252 gaattggctctaagccaggatccatgtt 279  Q
     |||| ||||||||| ||||||||||||    
T  1644687 aaattagctctaagctaggatccatgtt 1644714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 19569559 - 19569687
Alignment:
Q  152 aaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaac 251  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| ||| || |||||||    
T  19569559 aaaaaatgataagattaagataaatgaatggaaagactattaaacatttcatttgacattgtgcaagaaaaacacaaatatgaatttttgaattgtgaac 19569658  T
Q  252 gaattggctctaagccaggatccatgttc 280  Q
      ||  ||||||||| |||||||||||||    
T  19569659 cgatgagctctaagctaggatccatgttc 19569687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 37081453 - 37081337
Alignment:
Q  149 cacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtg 248  Q
    ||||||| ||||||| | ||||||||||||||||||||||||| |||||||| |||| | ||| |||||||||||||||||||| ||||||| |||||||    
T  37081453 cacaaaacatgataagaataagagaaatgaacggaaagactatcaaacattttattttatattgtgcaagaagaacacaagtatgaatctttgaaatgtg 37081354  T
Q  249 aacgaattggctctaag 265  Q
    |||  ||| ||||||||    
T  37081353 aaccgattagctctaag 37081337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 24578611 - 24578680
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaa 217  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||| |||||    
T  24578611 ccacaaaaaatgataaaattaagagaaatgaatgaaaatactattaaacacttcatttgacattgtgcaa 24578680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 3563566 - 3563653
Alignment:
Q  193 aaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttc 280  Q
    |||||||||||| |||||| | |||||||| ||||||||| ||||||| |||| | ||| |||| ||||||||| |||||||||||||    
T  3563566 aaacatttcattcgacattttacaagaagagcacaagtatgaatctttgaaatataaaccaattagctctaagctaggatccatgttc 3563653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 280
Target Start/End: Original strand, 28538479 - 28538611
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgt 247  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  28538479 ccacaaaaaatgataagattaagagaaatgaatggaaagattatgaaacatttcatttgacattgtgctagaagaacacaagtatgaatctttgaaatgt 28538578  T
Q  248 gaacgaattggctctaagccaggatccatgttc 280  Q
    |||| ||||  |||||||| |||||||||||||    
T  28538579 gaaccaattaactctaagctaggatccatgttc 28538611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 2900379 - 2900512
Alignment:
Q  143 taatcccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaa 242  Q
    |||| ||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||| |    
T  2900379 taattccacagaaaatgacaagattaagagaaatgaatggaaagactattaaacatttcatttgacattgtgc---aagaacacaagtataaatctttga 2900475  T
Q  243 aatgtgaacgaattggctctaagccaggatccatgtt 279  Q
    ||||  ||| |||| ||||||||| ||||||||||||    
T  2900476 aatgacaaccaattagctctaagctaggatccatgtt 2900512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 23971164 - 23971060
Alignment:
Q  152 aaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaac 251  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| || |||||||    
T  23971164 aaaaaatgataagattaagagaaatgaactgaaagactattaaacatttcatttgacattgtgcaagaaaaacacaagtatgaatctttgaagtgtgaac 23971065  T
Q  252 gaatt 256  Q
     ||||    
T  23971064 caatt 23971060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 27908274 - 27908408
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgt 247  Q
    ||||||||||| |||| ||||||| ||||||| ||||||| || |||| ||||||||| ||||| ||||| |||||||||||||| ||| ||| ||||||    
T  27908274 ccacaaaaaattataagattaagaaaaatgaatggaaagattaataaatatttcatttcacattgtgcaacaagaacacaagtatgaatatttgaaatgt 27908373  T
Q  248 gaacgaattggctctaagccaggatccatgttcca 282  Q
    |||| |||| ||||||||| |||||||||||||||    
T  27908374 gaaccaattagctctaagctaggatccatgttcca 27908408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 6136078 - 6136210
Alignment:
Q  151 caaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaa 250  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||| |||||||||    
T  6136078 caaaaaatgataagatcaagagaaatgaatggaaagactattaaacatttcatttgatattgtgcaagaagaacacatgtatgaatctttgaaatgtgaa 6136177  T
Q  251 cgaattggctctaagccaggatccatgttccag 283  Q
      |||| ||||||||| ||||||||||| ||||    
T  6136178 tcaattagctctaagctaggatccatgtgccag 6136210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 17405273 - 17405141
Alignment:
Q  150 acaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtga 249  Q
    |||||||||||||| ||||||| ||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| || |||||    
T  17405273 acaaaaaatgataagattaagataaatgaatgagaagactattaaacatttcatttgacattgtgcaagaagaacacaagtatgaattttttaagtgtga 17405174  T
Q  250 acgaattggctctaagccaggatccatgttcca 282  Q
    || |||| ||||||||  |||||||||||||||    
T  17405173 accaattagctctaaggtaggatccatgttcca 17405141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 2946637 - 2946749
Alignment:
Q  152 aaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaac 251  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||| ||||| || |    
T  2946637 aaaaaatgataagattaagagaaatgaatggaaagactatttaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgcgagc 2946736  T
Q  252 gaattggctctaa 264  Q
     |||| |||||||    
T  2946737 caattagctctaa 2946749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 14134009 - 14134056
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaa 195  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  14134009 ccacaaaaaatgataagattaagagaaatgaacggaaaaactattaaa 14134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 283
Target Start/End: Complemental strand, 9021907 - 9021772
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgt 247  Q
    |||||||||||||||  ||||| ||||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  9021907 ccacaaaaaatgatacgattaaaagaaatgaaagggaaaactattaaacatttcatttgacattgtgcaagaagaacacaagtatgaatctttgaaatgt 9021808  T
Q  248 gaacgaattggctctaagccaggatccatgttccag 283  Q
     ||| |||| ||||||||| |  |||||||||||||    
T  9021807 aaaccaattagctctaagctataatccatgttccag 9021772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 25226627 - 25226679
Alignment:
Q  198 tttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaa 250  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||    
T  25226627 tttcatttgacattgtgcaaaaagaacacgagtatgaatctttgaaatgtgaa 25226679  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 27991647 - 27991531
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgt 247  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| || ||||||    
T  27991647 ccacaaaaaatgataagattaagggaaatgaatggaaagactattaaacatttcattttacattatgcaaaaagaacacaagtatgaatcattgaaatgt 27991548  T
Q  248 gaacgaattggctctaa 264  Q
    |||  |||| |||||||    
T  27991547 gaatcaattagctctaa 27991531  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 13627803 - 13627895
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatcttt 240  Q
    |||||||||||||||| ||||| |||| |||||| || ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||    
T  13627803 ccacaaaaaatgataagattaaaagaagtgaacgaaatgactattaaacattttatttgacattatgcaagaaaaacacaaatatgaatcttt 13627895  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 27991702 - 27991667
Alignment:
Q  91 tgaatttggatgtcttgagcaaatcaagagagtggt 126  Q
    ||||||||||||||||| ||||||||||||||||||    
T  27991702 tgaatttggatgtcttgggcaaatcaagagagtggt 27991667  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 15023696 - 15023568
Alignment:
Q  150 acaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtga 249  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||| ||| ||||||||    
T  15023696 acaaaaaatgataagattaagagatatgaatggaaagactattaaacatttcatttgacattgtacaaaaagaacacaagtatgaatttttgaaatgtga 15023597  T
Q  250 acgaattggctctaagccaggatccatgt 278  Q
    |  |||| ||||||| | |||||||||||    
T  15023596 atcaattagctctaaactaggatccatgt 15023568  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 21714317 - 21714409
Alignment:
Q  173 aaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaag 265  Q
    |||||||  |||||||||||||| ||||||||||| ||| |||| ||||||||||||||| ||| ||| |||||||||| |||| || |||||    
T  21714317 aaatgaatcgaaagactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaag 21714409  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 2808440 - 2808500
Alignment:
Q  148 ccacaaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgac 208  Q
    |||||||||||||||| | |||||||||| |||||||| ||||||||| ||||||||||||    
T  2808440 ccacaaaaaatgataagagtaagagaaattaacggaaaaactattaaatatttcatttgac 2808500  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 21788231 - 21788323
Alignment:
Q  173 aaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaag 265  Q
    |||||||  |||| ||||||||| ||||||||||| ||| |||| ||||||||||||||| ||| ||| |||||||||| |||| || |||||    
T  21788231 aaatgaatcgaaaaactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaag 21788323  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 13502537 - 13502447
Alignment:
Q  182 gaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggat 272  Q
    ||||| |||||||| |||| ||| || ||| |||||||||||||||||||| ||| ||| |||||||||  |||| || |||||| |||||    
T  13502537 gaaaggctattaaatattttattcgatattgtgcaagaagaacacaagtatgaatatttgaaatgtgaatcaattagccctaagctaggat 13502447  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 4634099 - 4633993
Alignment:
Q  159 gataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattgg 258  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||| ||||||| |||||||||| ||||||    
T  4634099 gataaaattaaaagaaatgaacggaaagactattaaacatttcatatgacattatgcaagaaaaatacaaatatgaatctttgaaatgtgaaccaattgg 4634000  T
Q  259 ctctaag 265  Q
    || ||||    
T  4633999 ctataag 4633993  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 32239022 - 32238918
Alignment:
Q  152 aaaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaac 251  Q
    |||||||||||| ||||||| ||||||||  ||||||||||||| ||||||||||||||| ||||| || ||| ||||||| |||||||||| |||||||    
T  32239022 aaaaaatgataagattaagaaaaatgaaccaaaagactattaaatatttcatttgacattgtgcaacaaaaacgcaagtatgaatctttaaagtgtgaac 32238923  T
Q  252 gaatt 256  Q
     ||||    
T  32238922 taatt 32238918  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 29677006 - 29676952
Alignment:
Q  153 aaaaatgataaaattaagagaaatgaacggaaagactattaaacatttcatttga 207  Q
    |||||| |||| |||||||||||||| |  ||||||||||||| |||||||||||    
T  29677006 aaaaattataagattaagagaaatgagctcaaagactattaaatatttcatttga 29676952  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 235802 - 235750
Alignment:
Q  198 tttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaa 250  Q
    |||||||||||||| ||||| |||||||  ||||| ||||||| |||||||||    
T  235802 tttcatttgacattgtgcaaaaagaacatgagtatgaatctttgaaatgtgaa 235750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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