View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_1 (Length: 607)
Name: NF5444_low_1
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 39181206 - 39180619
Alignment:
| Q |
1 |
agctgccaaagcttaactctcaagggcaaaaactagaaaacatgacgcttaacaataagcaaaaccaagctgcaacaatattgggctggtgctcactccg |
100 |
Q |
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| T |
39181206 |
agctgccaaagcttaactctctagggcaaaaactagaaaacatgacgcttaacaataagcaaaaccaagctgcaacaatattgggctggtgctcactccg |
39181107 |
T |
|
| Q |
101 |
gaagctgaagtcttaattgaaaggtagcaccatttcagatcaaaccacaacgattcaaggttagcactcactccggtaacttaaaacaaaacaggtgttc |
200 |
Q |
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| T |
39181106 |
gaagctgaagtcttaattgaaaggtagcaccatttcagatcaaaccacaacgattcaaggttagcactcactccggtaacttaaaacaaaacaggtgttc |
39181007 |
T |
|
| Q |
201 |
ggttagttctcactccggtgcctaaaactctaattgaaatggattatggtggcaaaatagaatatgcagcactttttatgaaaggcagcatatacttgag |
300 |
Q |
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| T |
39181006 |
ggctagttctcactccggtgcctaaaactctaattgaaatggattatggtggcaaaatagaatatgcagcactttttatgaaaggcagcatatacttgag |
39180907 |
T |
|
| Q |
301 |
gcacgcaaaccagcccaaactgaccaaagatgcttacaaacgatggaaaatgttgatacagcccaaatacataaacaacgagcaaaacacaaaacggaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39180906 |
gcacgcaaaccagcccaaactgaccaaagatgcttacaaacgatggaaaatgttgatacagcccaaatacataaacaacgagcaaaacacaaaacggaaa |
39180807 |
T |
|
| Q |
401 |
gtcaccaaaaaccaaatagtgcagcagaaaatatagatgcataacccaacctgtgccaaaacggaaagaggagacaccgacaatcacaatgggaaaaaca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39180806 |
gtcaccaaaaaccaaatagtgcagcagaaaatatagatgcataacccaacctgtgccaaaacggaaagaggagacgccgacaatcacaatgggaaaaaca |
39180707 |
T |
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| Q |
501 |
acattgcaaaattcggtcagcaaggcagcgagtacctcacgcaccagtgaagatgtgcagctgtgacgacgcgtgaaagtgcatgact |
588 |
Q |
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| T |
39180706 |
acattgcaaaattcggtcagcaaggcagcgagtacctcacgcaccagtgaagatgtgcagctgtgatgacgcgtgaaagtgcatgact |
39180619 |
T |
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