View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_10 (Length: 288)
Name: NF5444_low_10
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 30370476 - 30370749
Alignment:
| Q |
1 |
cagagtgtgtgaagaatttggagacaagaaatacgatgatgaagaatctcaatatcttctccaagaaacctaagccaaaaggttccttctttatcattcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
30370476 |
cagagtgtgtgaagaatttggagacaagaaatacgatgatgaagaatctcaatatcttctccaagaaacctaagccaaaaggttcattctttatcatt-c |
30370574 |
T |
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| Q |
101 |
attcgatcactcactttctcatgttttgtctttcttcttctgttctgttccttccactgtcattcaatttt-----attaaaacaaccatttttctatta |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
30370575 |
attcgatcactcactttctcatgttttgtctttcttcttctgttctgttccttccaccgtcattcaattttgcttgattaaaacaaccatttttctatta |
30370674 |
T |
|
| Q |
196 |
acannnnnnntctctatccatgcagaggttctgagagagagtaaacgtgaaatggccaatgccactagaggtaat |
270 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30370675 |
acaccccccctctctatccatgcagaggttctgagagagagtaaacgtgaaatggccaatgcaactagaggtaat |
30370749 |
T |
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