View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_12 (Length: 273)
Name: NF5444_low_12
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 3719199 - 3719355
Alignment:
| Q |
1 |
acactatttaaggatcgtacatttataaattattgttttaaaaagtc---tattacaatttttaagttaatgattatacaaattttcacaaaaacttaca |
97 |
Q |
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| T |
3719199 |
acactatttaaggatcgtatatttataaattattgttttaaaaagtcaactattacaatttttaagttaatgattatacaaattttcacaaaaa-ttata |
3719297 |
T |
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| Q |
98 |
tttttaagtcattttaaaaagtgtcctggaaatactcgttagcattttccttaaaata |
155 |
Q |
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| T |
3719298 |
tttttaagtcattttaaaaagtgtcccagaaatactcgttagcattttccttaaaata |
3719355 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 3719344 - 3719422
Alignment:
| Q |
181 |
ttccttaaaatatttaaatatatgatacatattttttggaattgattcaagaaatgtgggccacaaacttttgaaactg |
259 |
Q |
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| T |
3719344 |
ttccttaaaatatttaaatatatgatacatattttttggaattgattcaagaaatgtgggccacaaacttttgaaactg |
3719422 |
T |
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