View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5444_low_13 (Length: 269)

Name: NF5444_low_13
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5444_low_13
NF5444_low_13
[»] chr1 (11 HSPs)
chr1 (83-269)||(3244782-3244968)
chr1 (137-183)||(42397695-42397741)
chr1 (129-185)||(38651499-38651555)
chr1 (126-162)||(52013818-52013854)
chr1 (132-162)||(15579410-15579440)
chr1 (129-162)||(15489357-15489390)
chr1 (138-186)||(1730825-1730873)
chr1 (233-269)||(29723522-29723558)
chr1 (233-269)||(35017609-35017645)
chr1 (229-269)||(35925719-35925759)
chr1 (127-187)||(41638398-41638458)
[»] chr7 (15 HSPs)
chr7 (123-185)||(5373143-5373205)
chr7 (129-186)||(45593808-45593865)
chr7 (131-181)||(33894549-33894599)
chr7 (130-185)||(46213728-46213783)
chr7 (128-186)||(31341117-31341175)
chr7 (127-161)||(39359955-39359989)
chr7 (128-186)||(49060463-49060521)
chr7 (227-268)||(2767180-2767221)
chr7 (123-180)||(6552365-6552422)
chr7 (129-162)||(7244626-7244659)
chr7 (127-179)||(3610836-3610888)
chr7 (229-269)||(27496408-27496448)
chr7 (229-269)||(27503066-27503106)
chr7 (137-218)||(27548195-27548278)
chr7 (233-269)||(27626124-27626160)
[»] chr6 (21 HSPs)
chr6 (128-186)||(2514625-2514683)
chr6 (128-186)||(24774681-24774739)
chr6 (129-179)||(31668781-31668831)
chr6 (129-162)||(4247747-4247780)
chr6 (233-269)||(2455843-2455879)
chr6 (229-269)||(34544145-34544185)
chr6 (129-184)||(32386190-32386245)
chr6 (233-267)||(9833113-9833147)
chr6 (120-186)||(29274318-29274384)
chr6 (120-184)||(264285-264350)
chr6 (129-186)||(3155100-3155157)
chr6 (137-186)||(20671954-20672003)
chr6 (127-184)||(24332865-24332921)
chr6 (233-269)||(283128-283164)
chr6 (122-162)||(5899268-5899308)
chr6 (233-269)||(8420198-8420234)
chr6 (233-269)||(9667986-9668022)
chr6 (130-182)||(10452453-10452505)
chr6 (233-269)||(17770455-17770491)
chr6 (127-178)||(33737504-33737556)
chr6 (229-269)||(34939773-34939813)
[»] chr3 (14 HSPs)
chr3 (128-186)||(44374733-44374791)
chr3 (229-269)||(49465937-49465977)
chr3 (128-186)||(41028940-41028998)
chr3 (137-186)||(42039091-42039140)
chr3 (135-186)||(3757978-3758029)
chr3 (127-186)||(33307669-33307728)
chr3 (130-184)||(36189491-36189545)
chr3 (137-186)||(20192695-20192744)
chr3 (129-186)||(27792796-27792853)
chr3 (130-186)||(905059-905115)
chr3 (229-269)||(1360527-1360567)
chr3 (138-186)||(1395604-1395652)
chr3 (128-160)||(28842972-28843004)
chr3 (128-184)||(51130659-51130715)
[»] scaffold0590 (1 HSPs)
scaffold0590 (130-186)||(1163-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (130-186)||(2756-2812)
[»] chr4 (16 HSPs)
chr4 (233-269)||(6987742-6987778)
chr4 (126-186)||(54325126-54325186)
chr4 (233-269)||(11264334-11264370)
chr4 (130-217)||(8422895-8422982)
chr4 (127-186)||(25487634-25487693)
chr4 (127-186)||(47970240-47970299)
chr4 (129-186)||(4191663-4191721)
chr4 (129-162)||(2980584-2980617)
chr4 (123-160)||(30079501-30079538)
chr4 (124-161)||(46415906-46415943)
chr4 (137-186)||(51044548-51044597)
chr4 (129-186)||(51555956-51556013)
chr4 (137-185)||(4798649-4798697)
chr4 (128-160)||(15511450-15511482)
chr4 (233-269)||(27725247-27725283)
chr4 (229-269)||(29467625-29467665)
[»] chr5 (15 HSPs)
chr5 (123-186)||(20982224-20982287)
chr5 (128-182)||(26516221-26516275)
chr5 (138-186)||(7096216-7096264)
chr5 (127-186)||(36539668-36539727)
chr5 (129-171)||(2569806-2569848)
chr5 (129-187)||(29115301-29115359)
chr5 (128-186)||(31694441-31694499)
chr5 (230-259)||(4948568-4948597)
chr5 (129-182)||(13224353-13224406)
chr5 (129-186)||(39257475-39257532)
chr5 (233-266)||(42582529-42582562)
chr5 (137-181)||(29588812-29588856)
chr5 (126-186)||(32059678-32059737)
chr5 (233-269)||(41052901-41052937)
chr5 (237-269)||(42181093-42181125)
[»] scaffold0024 (1 HSPs)
scaffold0024 (128-186)||(27499-27557)
[»] chr8 (9 HSPs)
chr8 (128-186)||(14482125-14482183)
chr8 (130-162)||(2342478-2342510)
chr8 (130-186)||(34770817-34770873)
chr8 (129-183)||(35298570-35298624)
chr8 (129-162)||(13652139-13652172)
chr8 (129-162)||(13710782-13710815)
chr8 (133-162)||(40868248-40868277)
chr8 (129-161)||(12972780-12972812)
chr8 (134-186)||(29973010-29973062)
[»] chr2 (16 HSPs)
chr2 (127-186)||(17952790-17952849)
chr2 (129-184)||(18962129-18962184)
chr2 (131-186)||(38239640-38239695)
chr2 (128-186)||(33197328-33197386)
chr2 (130-184)||(43808501-43808555)
chr2 (129-162)||(11393768-11393801)
chr2 (129-162)||(11410429-11410462)
chr2 (137-186)||(25609728-25609777)
chr2 (137-182)||(41039739-41039784)
chr2 (229-269)||(1742033-1742073)
chr2 (233-269)||(1939333-1939369)
chr2 (120-215)||(2416227-2416325)
chr2 (233-269)||(10285893-10285929)
chr2 (130-186)||(31461363-31461419)
chr2 (233-269)||(34652037-34652073)
chr2 (137-185)||(44443252-44443300)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 83 - 269
Target Start/End: Original strand, 3244782 - 3244968
Alignment:
Q  83 tgacatgtaatcaaaatgaacacacaatatttaaaaccacaagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3244782 tgacatgtaatcaaaatgaacacacaatatttaaaaccacaagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 3244881  T
Q  183 gtcattattttgatgtaagttagaagctgttttcattagttgtcgtgagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3244882 gtcattattttgatgcaagttagaagctgttttcattagttgtcgtgagtttatggaaataagttgaaaatagcttatggacatgtc 3244968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 42397695 - 42397741
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaag 183  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  42397695 taagtgcttatgtataagctatttctgtaacaaaacataaaataaag 42397741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 38651555 - 38651499
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 185  Q
    ||||||||||||||||||||||||||||| ||||   |||||| ||||| |||||||    
T  38651555 ttatcatgtaagtgcttatgtataagctaattctataacaaaagataaactaaagtc 38651499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 52013818 - 52013854
Alignment:
Q  126 tacttatcatgtaagtgcttatgtataagctatttct 162  Q
    |||||||||||||| ||||||||||||||||||||||    
T  52013818 tacttatcatgtaaatgcttatgtataagctatttct 52013854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 15579410 - 15579440
Alignment:
Q  132 tcatgtaagtgcttatgtataagctatttct 162  Q
    |||||||||||||||||||||||||||||||    
T  15579410 tcatgtaagtgcttatgtataagctatttct 15579440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 15489357 - 15489390
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  15489357 ttatcatttaagtgcttatgtataagctatttct 15489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 1730825 - 1730873
Alignment:
Q  138 aagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||||||||||||||||| ||  || ||| ||||||||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtca 1730873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 29723522 - 29723558
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  29723522 ttatgtaaataagttgaaaacagtttatggacatgtc 29723558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 35017609 - 35017645
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||||||||  |||||||||||||    
T  35017609 ttatggaaataagttgaaaataacttatggacatgtc 35017645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 35925719 - 35925759
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  35925719 gagtttatggaaataagttgaaaacagcttatgaacatgtc 35925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 41638458 - 41638398
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtcat 187  Q
    ||||||||| |||||||||||||||||  ||||| | | ||| || |||||||||||||||    
T  41638458 acttatcatataagtgcttatgtataatttatttatagaacacaagataaaataaagtcat 41638398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 5373143 - 5373205
Alignment:
Q  123 aagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 185  Q
    |||| ||||||||||||||||||||||||| |||||||||   |||||| |||||||||||||    
T  5373143 aagtgcttatcatgtaagtgcttatgtatatgctatttctataacaaaagataaaataaagtc 5373205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 45593865 - 45593808
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||    
T  45593865 ttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtca 45593808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 33894549 - 33894599
Alignment:
Q  131 atcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataa 181  Q
    ||||||||||||||||||||||||||||||||   |||||| |||||||||    
T  33894549 atcatgtaagtgcttatgtataagctatttctataacaaaagataaaataa 33894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 46213728 - 46213783
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 185  Q
    |||||| |||||||||||||| |||||||||||   |||||| |||||||||||||    
T  46213728 tatcatataagtgcttatgtaaaagctatttctataacaaaatataaaataaagtc 46213783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 31341117 - 31341175
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| ||| |||||||||||||||||||| |   |||||| ||||||||||||||    
T  31341117 cttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtca 31341175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 39359955 - 39359989
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttc 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  39359955 acttatcatgtaagtgctcatgtataagctatttc 39359989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 49060463 - 49060521
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| |||||  |||||||||||||||||||   |||||| ||||||||||||||    
T  49060463 cttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtca 49060521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 2767221 - 2767180
Alignment:
Q  227 gtgagtttatggaaataagttgaaaatagtttatggacatgt 268  Q
    |||| ||||||||||||||||||||| |||| ||||||||||    
T  2767221 gtgaatttatggaaataagttgaaaacagttgatggacatgt 2767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 6552422 - 6552365
Alignment:
Q  123 aagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaata 180  Q
    ||||||||||||| |||||||||||||| ||| |||||||   |||||| ||||||||    
T  6552422 aagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 7244626 - 7244659
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttct 7244659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 3610888 - 3610836
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaat 179  Q
    |||| |||| ||||||||||||||||||||||||||   |||||| |||||||    
T  3610888 acttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaat 3610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 27496448 - 27496408
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  27496448 gagtttatggaaataagctgaaaacagcttatggacatgtc 27496408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 27503106 - 27503066
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  27503106 gagtttatggaaataagctgaaaacagcttatggacatgtc 27503066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 27548195 - 27548278
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc--attattttgatgtaagttagaagctgttttcat 218  Q
    ||||||||||| ||||||||||||| |   ||||| |||||||||||||  ||| |||| || |||| || |||||||||||||    
T  27548195 taagtgcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcat 27548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 27626160 - 27626124
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  27626160 ttatggaaataagtttaaaacagtttatggacatgtc 27626124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 2514625 - 2514683
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||||||||||||||||||||||||||   | |||| ||||||||||||||    
T  2514625 cttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtca 2514683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 24774681 - 24774739
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||||||||||| ||||| ||||||||   |||||| ||||||||||||||    
T  24774681 cttatcatgtaagtgcttatatataaactatttctataacaaaatataaaataaagtca 24774739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 31668831 - 31668781
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaat 179  Q
    ||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  31668831 ttatcatataagtgcttatgtataagctatttctataacaaaacataaaat 31668781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 4247780 - 4247747
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||||||||||||||||||||||||||||||    
T  4247780 ttatcatgtaagtgcttatgtataagctatttct 4247747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 2455843 - 2455879
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||||||||||||| ||||||    
T  2455843 ttatggaaataagttgaaaatagtttatgggcatgtc 2455879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 34544185 - 34544145
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  34544185 gagtttatagaaataagatgaaaatagtttatggacatgtc 34544145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 32386245 - 32386190
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    ||||||| |||||||||||||||||||||||||   || |||| ||||||||||||    
T  32386245 ttatcatataagtgcttatgtataagctatttcacttagaaaagataaaataaagt 32386190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 9833147 - 9833113
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatg 267  Q
    |||||||||||||||||||||| ||||||||||||    
T  9833147 ttatggaaataagttgaaaataatttatggacatg 9833113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 29274384 - 29274318
Alignment:
Q  120 cacaagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||| ||||||||  || ||||||||||||||||||||||    ||||| ||||||||||||||    
T  29274384 cacaagttcttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtca 29274318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 264285 - 264350
Alignment:
Q  120 cacaagtacttatcatg-taagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||    ||||| ||||||||||||    
T  264285 cacaagtgcttatcatgataagtgcttatatataagctatttctaaagcaaaagataaaataaagt 264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 3155100 - 3155157
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||| ||| || ||||||||||||||| |||| ||||||| |||||| |||||||    
T  3155100 ttatcatataaatggttatgtataagctatctcttttacaaaagataaaacaaagtca 3155157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 20672003 - 20671954
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| ||||||||||||||||||| |  ||||| ||||||||||||||    
T  20672003 taagtgattatgtataagctatttctagatcaaaagataaaataaagtca 20671954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 24332865 - 24332921
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    ||||||| | |||||| |||||||||||||||||||| || |||| ||||||||||||    
T  24332865 acttatcctataagtgattatgtataagctatttctt-taaaaaagataaaataaagt 24332921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 283128 - 283164
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||| |||||||| |||||||||||||||||||||||    
T  283128 ttatagaaataagctgaaaatagtttatggacatgtc 283164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 5899268 - 5899308
Alignment:
Q  122 caagtacttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||| ||||||||||||||| |||| ||||||||||||||    
T  5899268 caagtgcttatcatgtaagtgtttatatataagctatttct 5899308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 8420234 - 8420198
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||||||||| || ||||||||||    
T  8420234 ttatggaaataagttgaaaatagcttgtggacatgtc 8420198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 9668022 - 9667986
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||| || |||||||||||||    
T  9668022 ttatggaaataagttgaaaacagcttatggacatgtc 9667986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 10452505 - 10452453
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 182  Q
    |||||| | ||||||||||||||||||||||||   |||||| ||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaa 10452453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 17770491 - 17770455
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  17770491 ttatgaaaataagttgaaaatagtttatgaacatgtc 17770455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 33737504 - 33737556
Alignment:
Q  127 acttatcatgt-aagtgcttatgtataagctatttcttgtacaaaacataaaa 178  Q
    ||||||||||| |||||||||||||| ||||||||||   |||||||||||||    
T  33737504 acttatcatgttaagtgcttatgtatcagctatttctgtaacaaaacataaaa 33737556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 34939773 - 34939813
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  34939773 gagtttatggaaataagctgaaaacaatttatggacatgtc 34939813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 44374791 - 44374733
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| |||||||||||||||||||||| ||||  |||||| ||||||||||||||    
T  44374791 cttatcatataagtgcttatgtataagctatatctttaacaaaagataaaataaagtca 44374733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 49465977 - 49465937
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  49465977 gagtttatggaaataagttgaaaatagttcatggacatgtc 49465937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 41028998 - 41028940
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| ||||||||||||||||||||||||||   |||||| | ||||||||||||    
T  41028998 cttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtca 41028940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 42039091 - 42039140
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  42039091 taagtgcttatgtataagctatttctgtaacaaaaaataaaataaagtca 42039140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 3757978 - 3758029
Alignment:
Q  135 tgtaagtgcttatgtataagctatttcttgt-acaaaacataaaataaagtca 186  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  3757978 tgtaagtgcttatgtataagctattt-ttgtaacaaaatataaaataaagtca 3758029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 33307728 - 33307669
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||| |||||||||||||||||||||||||    |||||| || |||||||||||    
T  33307728 acttatcatataagtgcttatgtataagctatttcagtaacaaaatatgaaataaagtca 33307669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 36189491 - 36189545
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    |||||| ||||||  ||||||||||||||||||  ||||||| ||||||||||||    
T  36189491 tatcatataagtgagtatgtataagctatttctcttacaaaagataaaataaagt 36189545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 20192744 - 20192695
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||||||||||||||| |   |||||| ||||||||||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtca 20192695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 27792796 - 27792853
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||| |||||||||||||||||||||||||    |||||| ||||||||| ||||    
T  27792796 ttatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtca 27792853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 905115 - 905059
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| |||| ||||| |||||||||||||||   |||||| ||||||||||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaaagataaaataaagtca 905059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 1360567 - 1360527
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  1360567 gagtttgtggaaataagctgaaaatagcttatggacatgtc 1360527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 1395604 - 1395652
Alignment:
Q  138 aagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| ||||||||||||||||||   |||||| ||||||||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaaagataaaataaagtca 1395652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 28843004 - 28842972
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctattt 160  Q
    |||||||| ||||||||||||||||||||||||    
T  28843004 cttatcatataagtgcttatgtataagctattt 28842972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 51130659 - 51130715
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    ||||||||| ||||||||||| ||||| |||||| | ||||||| ||||| ||||||    
T  51130659 cttatcatgcaagtgcttatgcataagttatttcctttacaaaagataaagtaaagt 51130715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 1219 - 1163
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtca 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 2756 - 2812
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtca 2812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 6987778 - 6987742
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||||||||||||||||||||    
T  6987778 ttatggaaataagttgaaaatagtttatggacatgtc 6987742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 54325186 - 54325126
Alignment:
Q  126 tacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||| ||||||||| ||||||| ||||||||  ||||||| ||||||||||||||    
T  54325186 tacttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtca 54325126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 11264334 - 11264370
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11264334 ttatggaaataagttgaaaacagtttatggacatgtc 11264370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 8422982 - 8422895
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtcattattttgatgtaagttagaagctgttttca 217  Q
    |||||| || ||||||||||||||||||||| |   | |||| |||||||||||||||| |||| || |||| || ||| ||||||||    
T  8422982 tatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtcattgttttcatataagctataagttgttttca 8422895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 25487693 - 25487634
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||| | ||| ||||||||||||||||||||||   |||||| ||||||||||||||    
T  25487693 acttatcctttaaatgcttatgtataagctatttctataacaaaaaataaaataaagtca 25487634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 47970240 - 47970299
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||| |||| ||||||||||||||||||||||||||   |||||| ||||||| ||||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtca 47970299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 4191663 - 4191721
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacat-aaaataaagtca 186  Q
    ||||||| ||||||||||||||||||||||||||   |||||| || ||||||||||||    
T  4191663 ttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtca 4191721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 2980617 - 2980584
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  2980617 ttatcatataagtgcttatgtataagctatttct 2980584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 30079538 - 30079501
Alignment:
Q  123 aagtacttatcatgtaagtgcttatgtataagctattt 160  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  30079538 aagtccttatcatgtaagtgcttaagtataagctattt 30079501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 46415943 - 46415906
Alignment:
Q  124 agtacttatcatgtaagtgcttatgtataagctatttc 161  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  46415943 agtacttatcatctaagtgcttacgtataagctatttc 46415906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 51044597 - 51044548
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| |||||||||||||||||||   |||||| ||||||||||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaaataaagtca 51044548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 51556013 - 51555956
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||| |||||||||||||||||||||||  |   |||||| ||||||||||||||    
T  51556013 ttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagtca 51555956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 4798697 - 4798649
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 185  Q
    ||||||||||||||||||||||||||    ||||| |||||||||||||    
T  4798697 taagtgcttatgtataagctatttctatatcaaaagataaaataaagtc 4798649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 15511482 - 15511450
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctattt 160  Q
    ||||||||||||||||||||||||||| |||||    
T  15511482 cttatcatgtaagtgcttatgtataagttattt 15511450  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 27725247 - 27725283
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27725247 ttatggaaatcatttgaaaatagtttatggacatgtc 27725283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 29467665 - 29467625
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  29467665 gagtttatggaaataagctgaaaacagcttatggacatgtc 29467625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 20982287 - 20982224
Alignment:
Q  123 aagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||| |||||||| ||||||||||||||||||||||||||   |||||  ||||||||||||||    
T  20982287 aagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtca 20982224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 26516221 - 26516275
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 182  Q
    |||||||| ||||||||||||||||||||||||||   |||||| ||||||||||    
T  26516221 cttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 7096264 - 7096216
Alignment:
Q  138 aagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtca 7096216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 36539668 - 36539727
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||| ||||||||||||| |||||||||| ||   ||||| ||||||||||||||    
T  36539668 acttatcatataagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtca 36539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 2569848 - 2569806
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaa 171  Q
    ||||||| |||||||||||||||||||||||||| | ||||||    
T  2569848 ttatcatataagtgcttatgtataagctatttctcgaacaaaa 2569806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 29115359 - 29115301
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtcat 187  Q
    |||||||  |||||||||||||||||||||||||   ||||||  ||||||||||||||    
T  29115359 ttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtcat 29115301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 31694441 - 31694499
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| |||||||||||| ||||||||| |||   |||||||||||| ||||||||    
T  31694441 cttatcatataagtgcttatgaataagctatgtctataacaaaacataaactaaagtca 31694499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 4948597 - 4948568
Alignment:
Q  230 agtttatggaaataagttgaaaatagttta 259  Q
    ||||||||||||||||||||||||||||||    
T  4948597 agtttatggaaataagttgaaaatagttta 4948568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 13224353 - 13224406
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 182  Q
    |||||||  |||||||||||||||||||||||||   |||||| ||||||||||    
T  13224353 ttatcatagaagtgcttatgtataagctatttctataacaaaagataaaataaa 13224406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 39257532 - 39257475
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||||||||||||||| ||||| |||   ||||||  |||||||||||||    
T  39257532 ttatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtca 39257475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 42582529 - 42582562
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacat 266  Q
    |||||||||||||||||||||| |||||||||||    
T  42582529 ttatggaaataagttgaaaataatttatggacat 42582562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 29588812 - 29588856
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataa 181  Q
    ||||||||||||||||||||||||||   |||||| |||||||||    
T  29588812 taagtgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 32059737 - 32059678
Alignment:
Q  126 tacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||| |||||||||||||||||||| ||| |||||   || ||||||||||||||    
T  32059737 tacttatcatataagtgcttatgtataagctgttt-ttgtaactaagataaaataaagtca 32059678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 41052901 - 41052937
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  41052901 ttatggaaataagttaaaaatagtttatgaacatgtc 41052937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 42181125 - 42181093
Alignment:
Q  237 ggaaataagttgaaaatagtttatggacatgtc 269  Q
    ||||||||| |||||||||||||||||||||||    
T  42181125 ggaaataagctgaaaatagtttatggacatgtc 42181093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 27499 - 27557
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||||||||||||||||||||| |||||||   ||| || ||||||||||||||    
T  27499 cttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtca 27557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 14482125 - 14482183
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| ||||||||||||||||| ||||||||   |||||| ||||||||||||||    
T  14482125 cttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtca 14482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 2342510 - 2342478
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttct 162  Q
    |||||||||||||||||||||||||||||||||    
T  2342510 tatcatgtaagtgcttatgtataagctatttct 2342478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 34770817 - 34770873
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||||||||||||||| || |||||||   ||||||| ||||||||||||||    
T  34770817 tatcatgtaagtgcttatgtaaaaactatttccattacaaaagataaaataaagtca 34770873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 35298624 - 35298570
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaag 183  Q
    ||||||| |||||||||||||||||||||||||    |||||| |||||||||||    
T  35298624 ttatcatataagtgcttatgtataagctatttcagtaacaaaagataaaataaag 35298570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 13652139 - 13652172
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  13652139 ttatcatctaagtgcttatgtataagctatttct 13652172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 13710782 - 13710815
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  13710782 ttatcatctaagtgcttatgtataagctatttct 13710815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 40868277 - 40868248
Alignment:
Q  133 catgtaagtgcttatgtataagctatttct 162  Q
    ||||||||||||||||||||||||||||||    
T  40868277 catgtaagtgcttatgtataagctatttct 40868248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 12972780 - 12972812
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttc 161  Q
    ||||||| |||||||||||||||||||||||||    
T  12972780 ttatcatataagtgcttatgtataagctatttc 12972812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 29973010 - 29973062
Alignment:
Q  134 atgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||||| |||||||||||||||  ||| ||  |||||||||||||    
T  29973010 atgtaagtgcttatatataagctatttctttaacacaaggtaaaataaagtca 29973062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 17952849 - 17952790
Alignment:
Q  127 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||| |||| |||||| ||||||||||||||   |||||| ||||||||||||||    
T  17952849 acttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtca 17952790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 18962184 - 18962129
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    ||||||||||||||||||||||| |||||||| |   |||||| ||||||||||||    
T  18962184 ttatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagt 18962129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38239695 - 38239640
Alignment:
Q  131 atcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||||||| |||||||||||||||||||   |||||| ||||||| ||||||    
T  38239695 atcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagtca 38239640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 33197386 - 33197328
Alignment:
Q  128 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||||| ||||||||||| ||||||||||||||   |||||| ||| ||||||||||    
T  33197386 cttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtca 33197328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 43808501 - 43808555
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 184  Q
    |||||| |||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  43808501 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 43808555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 11393801 - 11393768
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  11393801 ttatcatttaagtgcttatgtataagctatttct 11393768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 11410462 - 11410429
Alignment:
Q  129 ttatcatgtaagtgcttatgtataagctatttct 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  11410462 ttatcatttaagtgcttatgtataagctatttct 11410429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 25609728 - 25609777
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    ||||||||||||||||||||||||||   | |||| ||||||||||||||    
T  25609728 taagtgcttatgtataagctatttctataagaaaagataaaataaagtca 25609777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 41039784 - 41039739
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaa 182  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||    
T  41039784 taagtgcttatgtataagctatttctgtgacaaaagataaaataaa 41039739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 1742073 - 1742033
Alignment:
Q  229 gagtttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||||| |||| ||||| |||||||    
T  1742073 gagtttatggaaataagttgaagatagcttatgcacatgtc 1742033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 1939369 - 1939333
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||| || |||||||||||||    
T  1939369 ttatggaaataagttgaaaacagcttatggacatgtc 1939333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 2416227 - 2416325
Alignment:
Q  120 cacaagtacttatcatgt-aagtgcttatgtataagctatttcttgta-caaaacataaaataaagt--cattattttgatgtaagttagaagctgtttt 215  Q
    ||||||| |||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||| ||||   ||| ||||||| |||| || ||||||||||    
T  2416227 cacaagttcttatcatgttaagtgcttatgtataagttatttc-tgtagcaaaagataaaatgaagttaaattgttttgatataagctataagctgtttt 2416325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 10285893 - 10285929
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||| || |||||||||||||    
T  10285893 ttatggaaataagttgaaaacagcttatggacatgtc 10285929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 31461363 - 31461419
Alignment:
Q  130 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 186  Q
    |||||| |||||| |||| ||||||||||||||   |||||| ||||||||||||||    
T  31461363 tatcatataagtggttatatataagctatttctataacaaaagataaaataaagtca 31461419  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 34652073 - 34652037
Alignment:
Q  233 ttatggaaataagttgaaaatagtttatggacatgtc 269  Q
    |||||||||||||||||||| || |||||||||||||    
T  34652073 ttatggaaataagttgaaaacagcttatggacatgtc 34652037  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 44443252 - 44443300
Alignment:
Q  137 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 185  Q
    |||||||||||||||||||||||| |  ||||||| |||||||| ||||    
T  44443252 taagtgcttatgtataagctatttttattacaaaagataaaatatagtc 44443300  T

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