View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_14 (Length: 261)
Name: NF5444_low_14
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 10752278 - 10752027
Alignment:
| Q |
1 |
aatcggggtcgattttttcttttcagttgaggtctatgattaagatgcttaagagtttggagcttatttgacaattctagctctaat---tggtggatac |
97 |
Q |
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| T |
10752278 |
aatcggggtcgattttttcttttcagttgaggtctatgattaagatgcttaagagtttggagcttatttgacaattctagctctaataattggtggatac |
10752179 |
T |
|
| Q |
98 |
ttgaaatctatgaataataattttgtattttgaatccaatattttaaaggacaagtaacaagttcattnnnnnnncacctcaaagtgcaagaaatacttt |
197 |
Q |
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| T |
10752178 |
ttgaaatctatgaataataattttgtattttgaatccaatattttaaaggacaagtaacaagttcattaaaaaaacacctcaaagtacaagaaatacttt |
10752079 |
T |
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| Q |
198 |
gtgagtgtata----aattacaatctnnnnnnngaggtatgtgtattaaaga |
245 |
Q |
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| T |
10752078 |
gtgagtgtatatataaattacaatctaaaaaaagaggtatgtgtattaaaga |
10752027 |
T |
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Back To:
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 2992741 - 2992817
Alignment:
| Q |
20 |
ttttcagttgaggtctatgattaagatgcttaagagtttggagcttatttgacaattctagctctaattggtggata |
96 |
Q |
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|||||| | |||| |||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
2992741 |
ttttcaatagaggactataattaagaggctcaagagtttggagcttatttgacaattctagttctaattgctggata |
2992817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 18359126 - 18359202
Alignment:
| Q |
20 |
ttttcagttgaggtctatgattaagatgcttaagagtttggagcttatttgacaattctagctctaattggtggata |
96 |
Q |
| |
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|||||| | |||| |||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
18359126 |
ttttcaatagaggactataattaagaggctcaagagtttggagcttatttgacaattctagttctaattgatggata |
18359202 |
T |
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