View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_2 (Length: 569)
Name: NF5444_low_2
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Original strand, 40517353 - 40517840
Alignment:
| Q |
20 |
cataaaagcatggctatatacacacaaaatgaaagattgattaatttacaacctcgtaatattgaaggctaggttgaagctagtgatgattttctacata |
119 |
Q |
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| T |
40517353 |
cataaaaacatggctatatacacacaaaatgaaagattgattaatttacaacctcgtaatattgaaggctaggttgaagctagtgatgattttctacata |
40517452 |
T |
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| Q |
120 |
tgggacaagtggaatgtaacacgagccatggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttata |
219 |
Q |
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| T |
40517453 |
tgggacaagtggaatgtaacacgagccatggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttata |
40517552 |
T |
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| Q |
220 |
atctcctaagcaaatagagcaactaattgaagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtg |
319 |
Q |
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| T |
40517553 |
atctcctaagcaaatagagcaactaattgaagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtg |
40517652 |
T |
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| Q |
320 |
tgatgacgaagtccttgttccatgattgagtcttcatgacgatgtggtggaaaaccagacaaaatattgagaatgtttcgacttcgtgaactacgaagtc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517653 |
tgatgacgaagtccttgttccatgattgagtcttcatgacgatgtggtggaaaaccggacaaaatattgagaatgtttcgacttcgtgaactacgaagtc |
40517752 |
T |
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| Q |
420 |
gaacacatgcaataactattgaaagaaccaagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
507 |
Q |
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| T |
40517753 |
gaacacatgcaataactattgaaagaaccaagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
40517840 |
T |
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