View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_3 (Length: 504)
Name: NF5444_low_3
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 485
Target Start/End: Complemental strand, 38126468 - 38126003
Alignment:
| Q |
34 |
cacattttatcagagaaaaagagcgattcaacttcaaaaagcaagctcaactgaaatgaa-----------aaagagtcaaagatactcacaatcattcc |
122 |
Q |
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| T |
38126468 |
cacatttgatcagagaaaattagcgatgcaacttcaaaaagcaagctcagctgaaatgaacatcatcagaaaaagagtagaagatactcacaatcattcc |
38126369 |
T |
|
| Q |
123 |
agcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctgcaaaaccaaaaagtggttagctagacaagaaa |
222 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||| |
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| T |
38126368 |
agcatgagcacacatataaaaatcataattcctaggatggcaaattttgctgtccacaacagttcctgcaataccaaaaagaggttggctagacatgaaa |
38126269 |
T |
|
| Q |
223 |
ccaactctatgtaaaataatggaattatgacaaacttc---ataagttgtttaccaggtggtacattgtctggagatcgaggttggaagaattttgtgtg |
319 |
Q |
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|||||| ||| ||||||||||||| ||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38126268 |
ccaactttatataaaataatggaactatgacaaacttcagaacaagctgattaccaggtggcacattgtctggagatcgaggttggaagaattttgtgtg |
38126169 |
T |
|
| Q |
320 |
atggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatcaagaaatttacaagcctaaaacttgaaaggttaagattaaacccnnnnn |
419 |
Q |
| |
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||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
38126168 |
atgattcttctgggcaacaatcaccataaacttggggttccaattttcatcaagaaatttacaagcctaaaacttgaaagatttagattaaacccaaaaa |
38126069 |
T |
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| Q |
420 |
nntaaaacaatatatatttaatgcaaatttgatcaatttaagaacctcgatgatttggctgagttc |
485 |
Q |
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| T |
38126068 |
aataaaacaatatatatttaatgcaaatttgttcaatttaagaacctcgatgatttggctgagttc |
38126003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 38118282 - 38118171
Alignment:
| Q |
91 |
gaaaaagagtcaaagatactcacaatcattccagcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctg |
190 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||| |
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| T |
38118282 |
gaaaaagagtagaagatactcacaatcattccagcatgagcacacatgtagaaatcataattccggggatgacagattttgttgtccacaacagtacctg |
38118183 |
T |
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| Q |
191 |
caaaaccaaaaa |
202 |
Q |
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|||||||||||| |
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| T |
38118182 |
caaaaccaaaaa |
38118171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 272 - 379
Target Start/End: Complemental strand, 38118091 - 38117984
Alignment:
| Q |
272 |
accaggtggtacattgtctggagatcgaggttggaagaattttgtgtgatggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatca |
371 |
Q |
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|||||| || ||||| || ||||||| ||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||| |
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| T |
38118091 |
accaggaggcacattatccggagatccaggctggaagaactttgtgtgatgattcttctgggcaacaataaccagaaatttggggttccacttttcatca |
38117992 |
T |
|
| Q |
372 |
agaaattt |
379 |
Q |
| |
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|||||||| |
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| T |
38117991 |
agaaattt |
38117984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 92 - 407
Target Start/End: Complemental strand, 14918817 - 14918498
Alignment:
| Q |
92 |
aaaaagagtcaaagatactcacaatcattccagcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctgc |
191 |
Q |
| |
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||||||||| |||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14918817 |
aaaaagagtagaagatactcacaattcttcctgcatgagaacacatatagaaatcataattcctaggatgacaaattttgttgtccacaacagttcctgc |
14918718 |
T |
|
| Q |
192 |
aaaaccaaaaagtggttagctagacaagaaaccaac-----tctatgtaaaataatggaattatgacaaactt---cataagttgtttaccaggtggtac |
283 |
Q |
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|||||||||||| |||||||| | ||||||||| | ||| ||||||||||||| ||||| |||| | | |||||| ||||||||||| || |
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| T |
14918717 |
aaaaccaaaaagaggttagct----atgaaaccaacattattatatataaaataatggaactatgaaaaacataagaacaagttgcttaccaggtggcac |
14918622 |
T |
|
| Q |
284 |
attgtctggagatcgaggttggaagaattttgtgtgatggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatcaagaaatttacaa |
383 |
Q |
| |
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||||| | || | |||||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||| |
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| T |
14918621 |
attgtttcgattttcaggttggaagaattttgtgtgatgtctcttctgggcaacaatcaacaaaaacttggggttccagtcttcatcaagaaatttacaa |
14918522 |
T |
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| Q |
384 |
gcctaaaacttgaaaggttaagat |
407 |
Q |
| |
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|||||||| ||||||| ||||||| |
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| T |
14918521 |
gcctaaaatttgaaagattaagat |
14918498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 485
Target Start/End: Complemental strand, 14918260 - 14918207
Alignment:
| Q |
432 |
tatatttaatgcaaatttgatcaatttaagaacctcgatgatttggctgagttc |
485 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
14918260 |
tatatttaatgcaaatttgatgaagttaagaacctcgatgatttggccgagttc |
14918207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 35469099 - 35469008
Alignment:
| Q |
104 |
agatactcacaatcattccagcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctgcaaaa |
195 |
Q |
| |
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|||||||||| ||||| |||||||||||||| | |||||||||||| || || |||||||||||||| |||| | |||||||||||||||| |
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| T |
35469099 |
agatactcactatcatcccagcatgagcacagaggtagaaatcatagtttcttggatgacaaattttattgtcgataacagttcctgcaaaa |
35469008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 37590833 - 37590882
Alignment:
| Q |
112 |
acaatcattccagcatgagcacacatgtagaaatcataattcctaggatg |
161 |
Q |
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| T |
37590833 |
acaatcattccagcatgagcacacatgtagaaatcgtaatttcttggatg |
37590882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 35468901 - 35468815
Alignment:
| Q |
303 |
tggaagaattttgtgtgatggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatcaagaaatttacaagcctaa |
389 |
Q |
| |
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||||||||| ||||||| |||||||| || |||||||| |||| ||| || ||| |||| ||||||||||||| || || |||||| |
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| T |
35468901 |
tggaagaatcttgtgtggtggttcttttgagcaacaattaccacaaattttggagtccaattttcatcaagaaacttgcatgcctaa |
35468815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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