View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5444_low_7 (Length: 340)
Name: NF5444_low_7
Description: NF5444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5444_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 43539470 - 43539164
Alignment:
| Q |
16 |
acaaggatattggacaccaacacgcaatcaccgataactaatttaagaaaatcacataatttaatttcaatgtaattatatgtgtcggtgttcgtgtttc |
115 |
Q |
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| T |
43539470 |
acaaggatattggacaccaacacgcagtcaccgataactaatttaaaaaaatcacataattcaatttcaatgtaactatatgtgtcggtgttcgtgtttc |
43539371 |
T |
|
| Q |
116 |
atggcctccgggtgttgctctatataannnnnnnnccaagtcttatcactagttacccaagattaggtgatacctggcgtaggaatcaatgtaattggag |
215 |
Q |
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| T |
43539370 |
atggcctacgggtattgctctatataattttttttccaagtcttatcactagttacccaagattaggtgatacctggcgtaggaatcaatgtaattggag |
43539271 |
T |
|
| Q |
216 |
gagaaacatggacaagaaaaatcctagcaccaggagaaacagcatgatcaagaacccatttcactacatccatatcatcttcaccaacagcaacataaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43539270 |
gagaaacatggacaagaaaaatcctagcaccaggagaaacagcatgatcaagaacccatttcactacatccatatcatcttcaccaacagcaacataaag |
43539171 |
T |
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| Q |
316 |
gtcatca |
322 |
Q |
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||||||| |
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| T |
43539170 |
gtcatca |
43539164 |
T |
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