View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445-Insertion-4 (Length: 625)
Name: NF5445-Insertion-4
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 3402758 - 3403375
Alignment:
| Q |
8 |
gctatgtgaacaacaaaatcatataagagaacaaaaatgctacttagagcgaaaaagaagttcacgatgatatcatggctatgcaactaacttaagcccg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402758 |
gctatgtgaacaacaaaatcatataagagaacaaaaatgctacttagagcgaaaaagaagttcacgatgatatcatggctatgcaactaacttaagcccg |
3402857 |
T |
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| Q |
108 |
tatttattccaccaaagaaaagatctgacagttgttgtaatttcgtgatcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402858 |
tatttattccaccaaagaaaagatctgacagttgttgtaatttcgtgatcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaa |
3402957 |
T |
|
| Q |
208 |
tgctacttagagcgaaaaaggggtgcattagttttgaacacaaattgttgcatctgtaggaagggtaacatgtggcgagacctctattttaggccaatat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402958 |
tgctacttagagcgaaaaaggggtgcattagttttgaacacaaattgttgcatctgtaggaagggtaacatgtggcgagacctctattttaggccaatat |
3403057 |
T |
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| Q |
308 |
ttgaaaacctaaagcgagattttggaccgttttatctttggaccgaccatgaacatcattattgatcaatacgatacatgggttctcaatactagttcca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403058 |
ttgaaaacctaaagcgagattttggaccgttttatctttggaccgaccatgaacatcattattgatcaatacgatacatgggttctcaatactagttcca |
3403157 |
T |
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| Q |
408 |
caatcgtctcaactacaccattctcaaattgaagaataatccatctaaaaacatgaatgaaagaaaccatgtgagtttggtgtggggcgttggaacatgt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3403158 |
caatcgtctcaactacaccattctcaaattgaagaataatccatctaaaaacatgaatgaaagaaaccatgtgagtttggtgtggggcgttggaagatgt |
3403257 |
T |
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| Q |
508 |
ctttgcaggcacagatccaagttaaacaaattgggggcagttgaccccactaacattctagtttcttcatgagtttttgaataaatttaannnnnnnctt |
607 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
3403258 |
ctttgcaggcacagatccaagttaagcaaattgggggcagttgaccccactaacattctaatttcttcatgagtttttgaataaatttaatttttttctt |
3403357 |
T |
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| Q |
608 |
aggcaaaataaagtgttg |
625 |
Q |
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| T |
3403358 |
aggcaaaattaagtgttg |
3403375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 20829917 - 20829789
Alignment:
| Q |
113 |
attccaccaaagaaaagatctgacagttgttgtaatttcgtgatcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaatgcta |
212 |
Q |
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|||| |||||||||||||| ||| |||| |||||||||| |||||||| | ||||||||||||| ||||||||| ||| | | || || |||||||| |
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| T |
20829917 |
attcaaccaaagaaaagatatgatggttgctgtaatttcgcgatcaatttgtgatagtgttgttccctataaacaacaacattagacaacaaaaatgctg |
20829818 |
T |
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| Q |
213 |
cttagagcgaaaaaggggtgcattagttt |
241 |
Q |
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|||||||||||| | |||||| |||||| |
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| T |
20829817 |
cttagagcgaaagtgaggtgcactagttt |
20829789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 20830015 - 20829971
Alignment:
| Q |
40 |
aaaaatgctacttagagcgaaaaagaagttcacgatgatatcatg |
84 |
Q |
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| T |
20830015 |
aaaaatgctacttagagtgaaaaagaagctcacaatgatatcatg |
20829971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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