View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445-Insertion-5 (Length: 500)
Name: NF5445-Insertion-5
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 197 - 500
Target Start/End: Complemental strand, 9073009 - 9072707
Alignment:
| Q |
197 |
gtttatctaccttcccatcaaaccctatggaagtcctcaagatataccaaattgtctaccaagcttgcccttacatcaaattcgcacactttaccgctaa |
296 |
Q |
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| T |
9073009 |
gtttatctaccttcccatcaaaccctatggaagtcctcaagatataccaaattgtctaccaagcttgcccttacatcaaattcgcacactttaccgctaa |
9072910 |
T |
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| Q |
297 |
ccatgccattttcgaggcgtttgaggcggaagagcgtgtccatgtcatcgaccttgatatccttcaaggctaccaatggcctgcattcatgcaggcattg |
396 |
Q |
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| T |
9072909 |
ccaagccattttcgaggcgtttgaggctgaagagcgtgtccatgtcatcgaccttgatatccttcaaggctaccaatggcctgcattcatgcaggcattg |
9072810 |
T |
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| Q |
397 |
gctgcacggcccggagggggctccgttcctcaggatcactggagtagggccgtgcatcgaatcggttagggaaaccggacgatgcttaacggaattagct |
496 |
Q |
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| T |
9072809 |
gctgcacggcccgga-ggtgctccgttcctccggatcactggagtagggccgtgcatcgaatcagttagggaaaccggacgatgcttaacggaattagct |
9072711 |
T |
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| Q |
497 |
catt |
500 |
Q |
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|||| |
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| T |
9072710 |
catt |
9072707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 9073198 - 9073068
Alignment:
| Q |
8 |
acatgctagcaagaaggtacctacaccagctcaatagagtagtaacaccactaggtgactccatgcaacgagtagcttcatgtttcacagaatctctaag |
107 |
Q |
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| T |
9073198 |
acatgctagcaagaaggtacctacaccagctcaatagagtagtaacaccactaggtgactccatgcaacgagtagcttcatgtttcacagaatctctaag |
9073099 |
T |
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| Q |
108 |
tgcaagacttgctgcaaccctaaccaccaag |
138 |
Q |
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| T |
9073098 |
tgcaagacttgctgcaaccctaaccaccaag |
9073068 |
T |
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