View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5445_high_11 (Length: 399)
Name: NF5445_high_11
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 46895741 - 46895389
Alignment:
| Q |
10 |
aataaaataaccataacagaaaaataacaaagttctgaaagttctaatattttgatatatagataatagatactatagactatttttaggaacaaagcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46895741 |
aataaaataaccataacagaaaaataacaaagttctgaaatttctaatattttgatatatagatagtagatactatagactatttttaggaacaaagcat |
46895642 |
T |
|
| Q |
110 |
ctttaaagagagatatatagggtggtgatgaggaaaggcatgtagatagagatgatcaagttaccattgttagaaaagagatgtttttcaagaacgtagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46895641 |
ctttaaagagagatatatagggtggtgatgaggaaaggcatgtagaaagagataatcaagttaccattgttagaaaagagatgtttttcaagaacgtagt |
46895542 |
T |
|
| Q |
210 |
attttgttagaaagatagggcaacattggataggatcatcacacattcttgggggaaaagaagcatttcgtattccgatccaagctaagatacagtggca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46895541 |
attttgttagaaagatagggcaacattggataggatcatcacacgttcttgggggaaaagaagcatttcgtattccgatccaagctaagatacggtggca |
46895442 |
T |
|
| Q |
310 |
tagagctatatggtgaccaaaatttcacatcgtcactgactgaacacattcac |
362 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
46895441 |
tagagctatatggtgaccgaaatttcacgtcgtcgctgcctgaacacattcac |
46895389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University